methyl seq 2 doesn't show up on ECDP

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On flowcell C235LACXX sample MethylSeq-2 is not showing up.  It is in GENEUS in 
the right processes,though, 27-205442 is the ID

Original issue reported on code.google.com by cmnico...@gmail.com on 16 Apr 2013 at 11:46

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pretty weird, looking into it

Original comment by zack...@gmail.com on 17 Apr 2013 at 6:12

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proving to be a trickier than i expected, still debugging

Original comment by zack...@gmail.com on 17 Apr 2013 at 11:37

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it shows up now. 

note that it is "no analysis" which is weird since the other libs in this 
multiplexed lane were analyzed, yet this particular lib was skipped. even more 
weird is that there is an entry for it in workflowparams, yet no resulting dir 
was ever created, there are no e/o logs from pbs which show it never ran. 

The db code got had never encountered the case where in a given lane, some of 
the libs were to be analyzed and others were to be "no analysis" / skipped. I 
updated the code to properly handle this situation.

Original comment by zack...@gmail.com on 18 Apr 2013 at 3:15

• Changed state: Done

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Here's why the analysis of methylseq-2 never happened, typo in the param file:

Sample.23.MethylSeq_2_TGACCA_L007_R1_001.fastq.gz,MethylSeq_2_TGACCA_L007_R2_001
.fastq.gz
should be 
Sample.23.Input = 
MethylSeq_2_TGACCA_L007_R1_001.fastq.gz,MethylSeq_2_TGACCA_L007_R2_001.fastq.gz

#Sample: MethylSeq-2 (Nicolet of Homo sapiens)
Sample.23.SampleID = NIC1252A44
Sample.23.Lane = 7
Sample.23.MethylSeq_2_TGACCA_L007_R1_001.fastq.gz,MethylSeq_2_TGACCA_L007_R2_001
.fastq.gz
Sample.23.Workflow = bisulfite
Sample.23.Reference = 
/home/uec-00/shared/production/genomes/hg19_rCRSchrm/hg19_rCRSchrm.fa

Original comment by zack...@gmail.com on 18 Apr 2013 at 4:06