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run epicentre data through bis pipeline #586

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago 
results at:

/export/uec-gs1/laird/shared/research/zack/epicentre

Original issue reported on code.google.com by zack...@gmail.com on 12 Sep 2013 at 10:18

GoogleCodeExporter commented 8 years ago 
pipeline complete:

18765 + 1235 in total (QC-passed reads + QC-failed reads)
5 + 0 duplicates
15157 + 0 mapped (80.77%:0.00%)
18765 + 1235 paired in sequencing
9668 + 332 read1
9097 + 903 read2
13386 + 0 properly paired (71.33%:0.00%)
13854 + 0 with itself and mate mapped
1303 + 0 singletons (6.94%:0.00%)
318 + 0 with mate mapped to a different chr
318 + 0 with mate mapped to a different chr (mapQ>=5)

Original comment by zack...@gmail.com on 13 Sep 2013 at 7:43

GoogleCodeExporter commented 8 years ago 
data has been analyzed, done.

Original comment by zack...@gmail.com on 17 Sep 2013 at 7:08