methylation fields missing in flow cell C2914ACXX

GoogleCodeExporter commented 8 years ago


There is at least one flow cell lane where it looks like the MethylSummary file 
is there but some of the methylation fields are missing (see below)

Metric Name in Database Flowcell    LIMS id CpG meth nuclear    CpH meth nuclear    GCH 
meth nuclear
Metric  flowcell_serial geneusID_sample methlevel_acg_percentage    methlevel_aca_pe
rcentage    methlevel_gca_percentage
Category    001. Sample Identification  001. Sample Identification  004. Bisulfite 
Conversion Metrics  004. Bisulfite Conversion Metrics   005. NOMe-seq
HCT-PBS C2914ACXX   KEL656A273  N/A N/A N/A
HCT-D25 C2914ACXX   KEL656A277  N/A N/A N/A
HCT-D5  C2914ACXX   KEL656A274  N/A N/A N/A
HCT-D10 C2914ACXX   KEL656A275  N/A N/A N/A
HCT-D15 C2914ACXX   KEL656A276  N/A N/A N/A
HCT-D42 C2914ACXX   KEL656A278  N/A N/A N/A
HCT116 5azaC    C166TACXX   WIT1251A55  67.5    7E-02   6E-02

Original issue reported on code.google.com by benb...@gmail.com on 1 Oct 2013 at 10:23

GoogleCodeExporter commented 8 years ago

yes, i see the bug.

Original comment by zack...@gmail.com on 1 Oct 2013 at 10:44

GoogleCodeExporter commented 8 years ago

bug fixed, but need to rebuild DB for changes to show up.

Original comment by zack...@gmail.com on 1 Oct 2013 at 10:53

GoogleCodeExporter commented 8 years ago

should be good now, verified with KEL656A275

Original comment by zack...@gmail.com on 3 Oct 2013 at 10:27

Changed state: Done

uec / Issue.Tracker

methylation fields missing in flow cell C2914ACXX #595