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Have a matric for the basic run parameter "Run Type" #619

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago
Would like to have a metric called "Run Type that says like 50 SR, 100 PE, etc. 
 This info is not in a specific field but I'm imagining the metric checking 
various places and putting the info together 

Original issue reported on code.google.com by cmnico...@gmail.com on 7 Nov 2013 at 6:10

GoogleCodeExporter commented 8 years ago
There is "RunParam_Read1" metric in Unused view that looks like a read length 
to me. I am not sure if I'm right about it though.. And there is a "Protocol" 
metric in Summary view that shows if the run is SE or PE. I could try to 
combine those together.

Original comment by natalia....@gmail.com on 7 Nov 2013 at 9:04

GoogleCodeExporter commented 8 years ago
maybe a pretty name for RunParam_Read1 work?

Original comment by zack...@gmail.com on 7 Nov 2013 at 9:10

GoogleCodeExporter commented 8 years ago
Yes that's a good idea, combine RunParam_Read1 with the protocol, but not
the spelled out protocol, just PE or SR.  That'll be perfect!

Original comment by cmnico...@gmail.com on 7 Nov 2013 at 9:43

GoogleCodeExporter commented 8 years ago
Done. I put it in Advanced View under "002. Sequencing run metrics"

Original comment by natalia....@gmail.com on 8 Nov 2013 at 9:23

GoogleCodeExporter commented 8 years ago
Looks great, thanks!

Original comment by cmnico...@gmail.com on 8 Nov 2013 at 9:47

GoogleCodeExporter commented 8 years ago

Original comment by natalia....@gmail.com on 4 Jan 2014 at 10:55