nocontamseqs

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move from unused to summary

call it "Total PF Reads (No adapter)"

Original issue reported on code.google.com by zack...@gmail.com on 14 Jan 2014 at 11:09

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and what about the "usable*" advanced reads

Original comment by zack...@gmail.com on 14 Jan 2014 at 11:11

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whats the diff between 
Total Reads Passing Filtering (mdups)   vs
PF reads total

either way the total reads should nocontamseqs + contamseqs

Original comment by zack...@gmail.com on 15 Jan 2014 at 8:19

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The DIFFERENCE:
Total Reads Passing Filtering (mdups)   = in_total_mdups_qcpassed
PF reads total = in_total_mdups_qcpassed + n_total_mdups_qcfailed

Original comment by natalia....@gmail.com on 15 Jan 2014 at 9:44

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I removed in_total_mdups_qcfailed from "PF reads total".

now these metrics are THE SAME

Both went to "Unused View".

Original comment by natalia....@gmail.com on 5 Feb 2014 at 12:57

• Changed state: Done