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install hadoop 2.3.0 #687

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago 
Hadoop was installed to cluster software/hadoop
the following  guide was used to set initial config: 
http://www.alexjf.net/blog/distributed-systems/hadoop-yarn-installation-definiti
ve-guide

memory and node setting formula were used from 

http://docs.hortonworks.com/HDPDocuments/HDP2/HDP-2.0.6.0/bk_installing_manually
_book/content/rpm-chap1-11.html

Original issue reported on code.google.com by zack...@gmail.com on 10 Mar 2014 at 10:55

GoogleCodeExporter commented 8 years ago 
to integrate it with gpfs (using symlink hacks) and make it deploy under pbs 
script the follow job script was created:

#!/usr/bin/perl
#
$nodes = $ARGV[0] || 4;
$nodes --;
#start master
runcmd("stop-yarn.sh");
runcmd("stop-dfs.sh");
runcmd (" mr-jobhistory-daemon.sh stop historyserver");
runcmd("rm 
/home/uec-00/shared/production/software/hadoop/default/etc/hadoop/slaves");
runcmd("rm -rf /export/uec-gs1/laird/shared/research/zack/hadoop/old");
runcmd("mkdir /export/uec-gs1/laird/shared/research/zack/hadoop/old");
runcmd("mv /export/uec-gs1/laird/shared/research/zack/hadoop/* 
/export/uec-gs1/laird/shared/research/zack/hadoop/old");
runcmd("hdfs namenode -format");
runcmd("hadoop-daemon.sh start namenode");
sleep 5;
runcmd ("yarn-daemon.sh start resourcemanager");
runcmd (" mr-jobhistory-daemon.sh start historyserver");

sub runcmd
{
    my $cmd=shift @_;
    my $caller=(caller(1))[3];
    print STDERR "$caller\t$cmd\n";
    system($cmd);
}

open PBS, ">hadoopSlaves.pbs";
#start slaves
print PBS <<EOF
#PBS -N hadoopSlaves
#PBS -S /bin/tcsh
#PBS -k n
#PBS -q laird
#PBS -l walltime=200:00:00
#PBS -l nodes=1:ppn=8:quadcore
#PBS -t 0-$nodes
sleep \$PBS_ARRAYID
hostname >> 
/home/uec-00/shared/production/software/hadoop/default/etc/hadoop/slaves
mkdir -p /export/uec-gs1/laird/shared/research/zack/hadoop/`date 
+"%m-%d-%y"`/\$PBS_ARRAYID
ln -s /export/uec-gs1/laird/shared/research/zack/hadoop/`date 
+"%m-%d-%y"`/\$PBS_ARRAYID /tmp/zackhadoop
sleep 30
hadoop-daemon.sh start datanode
sleep 5
yarn-daemon.sh start nodemanager
sleep 864000
EOF

runcmd("qsub hadoopSlaves.pbs");

Original comment by zack...@gmail.com on 10 Mar 2014 at 10:58

GoogleCodeExporter commented 8 years ago 
config files:

#.cshrc
setenv HADOOP_HOME /home/uec-00/shared/production/software/hadoop/default
setenv HADOOP_MAPRED_HOME /home/uec-00/shared/production/software/hadoop/default
setenv HADOOP_YARN_HOME /home/uec-00/shared/production/software/hadoop/default
setenv HADOOP_COMMON_HOME /home/uec-00/shared/production/software/hadoop/default
setenv HADOOP_HDFS_HOME /home/uec-00/shared/production/software/hadoop/default
setenv HADOOP_CONFIG_DIR 
/home/uec-00/shared/production/software/hadoop/default/etc/hadoop
setenv YARN_CONFIG_DIR 
/home/uec-00/shared/production/software/hadoop/default/etc/hadoop
setenv HADOOP_COMMON_LIB_NATIVE_DIR 
/home/uec-00/shared/production/software/hadoop/default/lib/native
setenv HADOOP_CLASSPATH 
/home/uec-00/shared/production/software/hadoop/default/etc/hadoop
setenv PIG_CLASSPATH 
/home/uec-00/shared/production/software/hadoop/default/etc/hadoop
setenv PIG_HOME /home/uec-00/shared/production/software/pig/default
setenv SEQPIG_HOME /home/uec-00/shared/production/software/seqpig/default
setenv SPARK_HADOOP_VERSION 2.2.0
setenv SPARK_YARN true

capacity-scheduler.xml
<!--
  Licensed under the Apache License, Version 2.0 (the "License");
  you may not use this file except in compliance with the License.
  You may obtain a copy of the License at

    http://www.apache.org/licenses/LICENSE-2.0

  Unless required by applicable law or agreed to in writing, software
  distributed under the License is distributed on an "AS IS" BASIS,
  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  See the License for the specific language governing permissions and
  limitations under the License. See accompanying LICENSE file.
-->
<configuration>

  <property>
    <name>yarn.scheduler.capacity.maximum-applications</name>
    <value>10000</value>
    <description>
      Maximum number of applications that can be pending and running.
    </description>
  </property>

  <property>
    <name>yarn.scheduler.capacity.maximum-am-resource-percent</name>
    <value>0.1</value>
    <description>
      Maximum percent of resources in the cluster which can be used to run
      application masters i.e. controls number of concurrent running
      applications.
    </description>
  </property>

  <property>
    <name>yarn.scheduler.capacity.resource-calculator</name>
    <value>org.apache.hadoop.yarn.util.resource.DefaultResourceCalculator</value>
    <description>
      The ResourceCalculator implementation to be used to compare
      Resources in the scheduler.
      The default i.e. DefaultResourceCalculator only uses Memory while
      DominantResourceCalculator uses dominant-resource to compare
      multi-dimensional resources such as Memory, CPU etc.
    </description>
  </property>

  <property>
    <name>yarn.scheduler.capacity.root.queues</name>
    <value>default</value>
    <description>
      The queues at the this level (root is the root queue).
    </description>
  </property>

  <property>
    <name>yarn.scheduler.capacity.root.default.capacity</name>
    <value>100</value>
    <description>Default queue target capacity.</description>
  </property>

  <property>
    <name>yarn.scheduler.capacity.root.default.user-limit-factor</name>
    <value>1</value>
    <description>
      Default queue user limit a percentage from 0.0 to 1.0.
    </description>
  </property>

  <property>
    <name>yarn.scheduler.capacity.root.default.maximum-capacity</name>
    <value>100</value>
    <description>
      The maximum capacity of the default queue.
    </description>
  </property>

  <property>
    <name>yarn.scheduler.capacity.root.default.state</name>
    <value>RUNNING</value>
    <description>
      The state of the default queue. State can be one of RUNNING or STOPPED.
    </description>
  </property>

  <property>
    <name>yarn.scheduler.capacity.root.default.acl_submit_applications</name>
    <value>*</value>
    <description>
      The ACL of who can submit jobs to the default queue.
    </description>
  </property>

  <property>
    <name>yarn.scheduler.capacity.root.default.acl_administer_queue</name>
    <value>*</value>
    <description>
      The ACL of who can administer jobs on the default queue.
    </description>
  </property>

  <property>
    <name>yarn.scheduler.capacity.node-locality-delay</name>
    <value>40</value>
    <description>
      Number of missed scheduling opportunities after which the CapacityScheduler
      attempts to schedule rack-local containers.
      Typically this should be set to number of nodes in the cluster, By default is setting
      approximately number of nodes in one rack which is 40.
    </description>
  </property>

</configuration>
core-site.xml
<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet type="text/xsl" href="configuration.xsl"?>
<!--
  Licensed under the Apache License, Version 2.0 (the "License");
  you may not use this file except in compliance with the License.
  You may obtain a copy of the License at

    http://www.apache.org/licenses/LICENSE-2.0

  Unless required by applicable law or agreed to in writing, software
  distributed under the License is distributed on an "AS IS" BASIS,
  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  See the License for the specific language governing permissions and
  limitations under the License. See accompanying LICENSE file.
-->

<!-- Put site-specific property overrides in this file. -->

<configuration>
  <property>
    <name>fs.defaultFS</name>
    <value>hdfs://hpc-laird/</value>
    <description>NameNode URI</description>
  </property>
</configuration>
hadoop-policy.xml
<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="configuration.xsl"?>
<!--

 Copyright 2011 The Apache Software Foundation

 Licensed to the Apache Software Foundation (ASF) under one
 or more contributor license agreements.  See the NOTICE file
 distributed with this work for additional information
 regarding copyright ownership.  The ASF licenses this file
 to you under the Apache License, Version 2.0 (the
 "License"); you may not use this file except in compliance
 with the License.  You may obtain a copy of the License at

     http://www.apache.org/licenses/LICENSE-2.0

 Unless required by applicable law or agreed to in writing, software
 distributed under the License is distributed on an "AS IS" BASIS,
 WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 See the License for the specific language governing permissions and
 limitations under the License.

-->

<!-- Put site-specific property overrides in this file. -->

<configuration>
  <property>
    <name>security.client.protocol.acl</name>
    <value>*</value>
    <description>ACL for ClientProtocol, which is used by user code
    via the DistributedFileSystem.
    The ACL is a comma-separated list of user and group names. The user and
    group list is separated by a blank. For e.g. "alice,bob users,wheel".
    A special value of "*" means all users are allowed.</description>
  </property>

  <property>
    <name>security.client.datanode.protocol.acl</name>
    <value>*</value>
    <description>ACL for ClientDatanodeProtocol, the client-to-datanode protocol
    for block recovery.
    The ACL is a comma-separated list of user and group names. The user and
    group list is separated by a blank. For e.g. "alice,bob users,wheel".
    A special value of "*" means all users are allowed.</description>
  </property>

  <property>
    <name>security.datanode.protocol.acl</name>
    <value>*</value>
    <description>ACL for DatanodeProtocol, which is used by datanodes to
    communicate with the namenode.
    The ACL is a comma-separated list of user and group names. The user and
    group list is separated by a blank. For e.g. "alice,bob users,wheel".
    A special value of "*" means all users are allowed.</description>
  </property>

  <property>
    <name>security.inter.datanode.protocol.acl</name>
    <value>*</value>
    <description>ACL for InterDatanodeProtocol, the inter-datanode protocol
    for updating generation timestamp.
    The ACL is a comma-separated list of user and group names. The user and
    group list is separated by a blank. For e.g. "alice,bob users,wheel".
    A special value of "*" means all users are allowed.</description>
  </property>

  <property>
    <name>security.namenode.protocol.acl</name>
    <value>*</value>
    <description>ACL for NamenodeProtocol, the protocol used by the secondary
    namenode to communicate with the namenode.
    The ACL is a comma-separated list of user and group names. The user and
    group list is separated by a blank. For e.g. "alice,bob users,wheel".
    A special value of "*" means all users are allowed.</description>
  </property>

 <property>
    <name>security.admin.operations.protocol.acl</name>
    <value>*</value>
    <description>ACL for AdminOperationsProtocol. Used for admin commands.
    The ACL is a comma-separated list of user and group names. The user and
    group list is separated by a blank. For e.g. "alice,bob users,wheel".
    A special value of "*" means all users are allowed.</description>
  </property>

  <property>
    <name>security.refresh.usertogroups.mappings.protocol.acl</name>
    <value>*</value>
    <description>ACL for RefreshUserMappingsProtocol. Used to refresh
    users mappings. The ACL is a comma-separated list of user and
    group names. The user and group list is separated by a blank. For
    e.g. "alice,bob users,wheel".  A special value of "*" means all
    users are allowed.</description>
  </property>

  <property>
    <name>security.refresh.policy.protocol.acl</name>
    <value>*</value>
    <description>ACL for RefreshAuthorizationPolicyProtocol, used by the
    dfsadmin and mradmin commands to refresh the security policy in-effect.
    The ACL is a comma-separated list of user and group names. The user and
    group list is separated by a blank. For e.g. "alice,bob users,wheel".
    A special value of "*" means all users are allowed.</description>
  </property>

  <property>
    <name>security.ha.service.protocol.acl</name>
    <value>*</value>
    <description>ACL for HAService protocol used by HAAdmin to manage the
      active and stand-by states of namenode.</description>
  </property>

  <property>
    <name>security.zkfc.protocol.acl</name>
    <value>*</value>
    <description>ACL for access to the ZK Failover Controller
    </description>
  </property>

  <property>
    <name>security.qjournal.service.protocol.acl</name>
    <value>*</value>
    <description>ACL for QJournalProtocol, used by the NN to communicate with
    JNs when using the QuorumJournalManager for edit logs.</description>
  </property>

  <property>
    <name>security.mrhs.client.protocol.acl</name>
    <value>*</value>
    <description>ACL for HSClientProtocol, used by job clients to
    communciate with the MR History Server job status etc.
    The ACL is a comma-separated list of user and group names. The user and
    group list is separated by a blank. For e.g. "alice,bob users,wheel".
    A special value of "*" means all users are allowed.</description>
  </property>

  <!-- YARN Protocols -->

  <property>
    <name>security.resourcetracker.protocol.acl</name>
    <value>*</value>
    <description>ACL for ResourceTrackerProtocol, used by the
    ResourceManager and NodeManager to communicate with each other.
    The ACL is a comma-separated list of user and group names. The user and
    group list is separated by a blank. For e.g. "alice,bob users,wheel".
    A special value of "*" means all users are allowed.</description>
  </property>

  <property>
    <name>security.resourcemanager-administration.protocol.acl</name>
    <value>*</value>
    <description>ACL for ResourceManagerAdministrationProtocol, for admin commands.
    The ACL is a comma-separated list of user and group names. The user and
    group list is separated by a blank. For e.g. "alice,bob users,wheel".
    A special value of "*" means all users are allowed.</description>
  </property>

  <property>
    <name>security.applicationclient.protocol.acl</name>
    <value>*</value>
    <description>ACL for ApplicationClientProtocol, used by the ResourceManager
    and applications submission clients to communicate with each other.
    The ACL is a comma-separated list of user and group names. The user and
    group list is separated by a blank. For e.g. "alice,bob users,wheel".
    A special value of "*" means all users are allowed.</description>
  </property>

  <property>
    <name>security.applicationmaster.protocol.acl</name>
    <value>*</value>
    <description>ACL for ApplicationMasterProtocol, used by the ResourceManager
    and ApplicationMasters to communicate with each other.
    The ACL is a comma-separated list of user and group names. The user and
    group list is separated by a blank. For e.g. "alice,bob users,wheel".
    A special value of "*" means all users are allowed.</description>
  </property>

  <property>
    <name>security.containermanagement.protocol.acl</name>
    <value>*</value>
    <description>ACL for ContainerManagementProtocol protocol, used by the NodeManager
    and ApplicationMasters to communicate with each other.
    The ACL is a comma-separated list of user and group names. The user and
    group list is separated by a blank. For e.g. "alice,bob users,wheel".
    A special value of "*" means all users are allowed.</description>
  </property>

  <property>
    <name>security.resourcelocalizer.protocol.acl</name>
    <value>*</value>
    <description>ACL for ResourceLocalizer protocol, used by the NodeManager
    and ResourceLocalizer to communicate with each other.
    The ACL is a comma-separated list of user and group names. The user and
    group list is separated by a blank. For e.g. "alice,bob users,wheel".
    A special value of "*" means all users are allowed.</description>
  </property>

  <property>
    <name>security.job.task.protocol.acl</name>
    <value>*</value>
    <description>ACL for TaskUmbilicalProtocol, used by the map and reduce
    tasks to communicate with the parent tasktracker.
    The ACL is a comma-separated list of user and group names. The user and
    group list is separated by a blank. For e.g. "alice,bob users,wheel".
    A special value of "*" means all users are allowed.</description>
  </property>

  <property>
    <name>security.job.client.protocol.acl</name>
    <value>*</value>
    <description>ACL for MRClientProtocol, used by job clients to
    communciate with the MR ApplicationMaster to query job status etc.
    The ACL is a comma-separated list of user and group names. The user and
    group list is separated by a blank. For e.g. "alice,bob users,wheel".
    A special value of "*" means all users are allowed.</description>
  </property>

</configuration>
hdfs-site.xml
<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet type="text/xsl" href="configuration.xsl"?>
<!--
  Licensed under the Apache License, Version 2.0 (the "License");
  you may not use this file except in compliance with the License.
  You may obtain a copy of the License at

    http://www.apache.org/licenses/LICENSE-2.0

  Unless required by applicable law or agreed to in writing, software
  distributed under the License is distributed on an "AS IS" BASIS,
  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  See the License for the specific language governing permissions and
  limitations under the License. See accompanying LICENSE file.
-->

<!-- Put site-specific property overrides in this file. -->

<configuration>
<configuration>
  <property>
    <name>dfs.datanode.data.dir</name>
    <value>file:///tmp/zackhadoop/datanode</value>
    <description>Comma separated list of paths on the local filesystem of a DataNode where it should store its blocks.</description>
  </property>

  <property>
    <name>dfs.namenode.name.dir</name>
    <value>file:///tmp/zackhadoop/namenode</value>
    <description>Path on the local filesystem where the NameNode stores the namespace and transaction logs persistently.</description>
  </property>
</configuration>

</configuration>
httpfs-site.xml
<?xml version="1.0" encoding="UTF-8"?>
<!--
  Licensed under the Apache License, Version 2.0 (the "License");
  you may not use this file except in compliance with the License.
  You may obtain a copy of the License at

  http://www.apache.org/licenses/LICENSE-2.0

  Unless required by applicable law or agreed to in writing, software
  distributed under the License is distributed on an "AS IS" BASIS,
  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  See the License for the specific language governing permissions and
  limitations under the License.
-->
<configuration>

</configuration>
mapred-site.xml
<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="configuration.xsl"?>
<!--
  Licensed under the Apache License, Version 2.0 (the "License");
  you may not use this file except in compliance with the License.
  You may obtain a copy of the License at

    http://www.apache.org/licenses/LICENSE-2.0

  Unless required by applicable law or agreed to in writing, software
  distributed under the License is distributed on an "AS IS" BASIS,
  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  See the License for the specific language governing permissions and
  limitations under the License. See accompanying LICENSE file.
-->

<!-- Put site-specific property overrides in this file. -->

<configuration>
    <property>
        <name>yarn.app.mapreduce.am.resource.mb</name>
        <value>2048</value>
    </property>
    <property>
        <name>yarn.app.mapreduce.am.command-opts</name>
        <value>-Xmx1634m</value>
    </property>
    <property>
        <name>mapreduce.framework.name</name>
        <value>yarn</value>
        <description>Execution framework.</description>
    </property>
    <property>
        <name>mapreduce.map.cpu.vcores</name>
        <value>1</value>
        <description>The number of virtual cores required for each map task.</description>
    </property>
    <property>
        <name>mapreduce.reduce.cpu.vcores</name>
        <value>1</value>
        <description>The number of virtual cores required for each map task.</description>
    </property>
    <property>
        <name>mapreduce.map.memory.mb</name>
        <value>1024</value>
        <description>Larger resource limit for maps.</description>
    </property>
    <property>
        <name>mapreduce.map.java.opts</name>
        <value>-Xmx820m</value>
        <description>Heap-size for child jvms of maps.</description>
    </property>
    <property>
        <name>mapreduce.reduce.memory.mb</name>
        <value>2048</value>
        <description>Larger resource limit for reduces.</description>
    </property>
    <property>
        <name>mapreduce.reduce.java.opts</name>
        <value>-Xmx1634m</value>
        <description>Heap-size for child jvms of reduces.</description>
    </property>
    <property>
        <name>mapreduce.jobtracker.address</name>
        <value>hpc-laird:8021</value>
    </property>
    <property>
        <name>mapreduce.jobhistory.address</name>
        <value>hpc-laird:10020</value>
    </property>
    <property>
        <name>mapreduce.jobhistory.webapp.address</name>
        <value>hpc-laird:19888</value>
    </property>

</configuration>
yarn-site.xml
<?xml version="1.0"?>
<!--
  Licensed under the Apache License, Version 2.0 (the "License");
  you may not use this file except in compliance with the License.
  You may obtain a copy of the License at

    http://www.apache.org/licenses/LICENSE-2.0

  Unless required by applicable law or agreed to in writing, software
  distributed under the License is distributed on an "AS IS" BASIS,
  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  See the License for the specific language governing permissions and
  limitations under the License. See accompanying LICENSE file.
-->
<configuration>
<property>
    <name>yarn.scheduler.minimum-allocation-mb</name>
    <value>1024</value>
    <description>Minimum limit of memory to allocate to each container request at the Resource Manager.</description>
  </property>
  <property>
    <name>yarn.scheduler.maximum-allocation-mb</name>
    <value>8192</value>
    <description>Maximum limit of memory to allocate to each container request at the Resource Manager.</description>
  </property>
  <property>
    <name>yarn.scheduler.minimum-allocation-vcores</name>
    <value>1</value>
    <description>The minimum allocation for every container request at the RM, in terms of virtual CPU cores. Requests lower than this won't take effect, and the specified value will get allocated the minimum.</description>
  </property>
  <property>
    <name>yarn.scheduler.maximum-allocation-vcores</name>
    <value>8</value>
    <description>The maximum allocation for every container request at the RM, in terms of virtual CPU cores. Requests higher than this won't take effect, and will get capped to this value.</description>
  </property>
  <property>
    <name>yarn.nodemanager.resource.memory-mb</name>
    <value>8192</value>
    <description>Physical memory, in MB, to be made available to running containers</description>
  </property>
  <property>
    <name>yarn.nodemanager.resource.cpu-vcores</name>
    <value>8</value>
    <description>Number of CPU cores that can be allocated for containers.</description>
  </property>
  <property>
    <name>yarn.nodemanager.aux-services</name>
    <value>mapreduce_shuffle</value>
    <description>shuffle service that needs to be set for Map Reduce to run </description>
  </property>
<property>
    <name>yarn.resourcemanager.resource-tracker.address</name>
    <value>hpc-laird:8031</value>
  </property>
<property>
 <name>yarn.resourcemanager.address</name>
<value>hpc-laird:8032</value>
</property>
<property>
<name>yarn.resourcemanager.scheduler.address</name>
<value>hpc-laird:8030</value>
</property>
 </configuration>

Original comment by zack...@gmail.com on 10 Mar 2014 at 11:20

GoogleCodeExporter commented 8 years ago

Original comment by zack...@gmail.com on 10 Mar 2014 at 11:21