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evaluate STAR vs tophat #721

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago 
lots of people using STAR, although many have noted issues when working with 
downstream data.

wonky MAPQs, etc

Original issue reported on code.google.com by zack...@gmail.com on 3 Apr 2014 at 5:07

GoogleCodeExporter commented 8 years ago 
http://www.bioplanet.com/gcat/reports/237-nggjskmpkk/alignment/100bp-pe-small-in
del/star-gh-m3/compare-23-18

Original comment by zack...@gmail.com on 3 Apr 2014 at 5:10

GoogleCodeExporter commented 8 years ago 
given our hardware and workload, we have enough resources to continue with the 
slower but more accurate tophat.

Original comment by zack...@gmail.com on 15 Apr 2014 at 6:50