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status says reads avai but they are not #734

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago 
Flow cell C42BRCAXX, 2014-4-22 run date

Original issue reported on code.google.com by cmnico...@gmail.com on 5 May 2014 at 6:34

GoogleCodeExporter commented 8 years ago 
Did you just create the links to fastqs this morning?
Currently "reads avail" shows up in ecdp-beta if the flowcell directory exists, 
and not when it actually has the fastq links. When the script run this night 
the flowcell directory probably was there but with no links, this is why status 
has changed.

Original comment by natalia....@gmail.com on 5 May 2014 at 7:55

GoogleCodeExporter commented 8 years ago 
OK, thanks for checking.  Let's change it so that the status only updates
when the files are actually there in ECDP   Meanwhile, files where the
fastqs ARE ready still say "in process" at
http://webapp.epigenome.usc.edu/eccpgxt/, 2014-04-18 run

Original comment by cmnico...@gmail.com on 5 May 2014 at 8:42

GoogleCodeExporter commented 8 years ago 
Ok, I'll try to make changes. 
'reads avail" state is only available in eccpgxt-beta, I am testing it. eccpgxt 
(production) uses different database generating code, it can display only "in 
process" or "analysis avail"

Original comment by natalia....@gmail.com on 5 May 2014 at 9:01

GoogleCodeExporter commented 8 years ago 
Made changes and deployed in eccpgxt-beta.

Original comment by natalia....@gmail.com on 8 May 2014 at 7:26

GoogleCodeExporter commented 8 years ago

Original comment by natalia....@gmail.com on 19 Sep 2014 at 11:08