Closed GoogleCodeExporter closed 8 years ago
I dont think changing the genome should matter here.
btw, we had some of cedar bisulfite lanes that were set to mm10, but yaping's
tool needs mm9, so changed them by hand as well.
anways, in this case, it was because:
TOTAL READS = 38560343
DISTINCT READS = 34657396
DISTINCT COUNTS = 29
MAX COUNT = 43
COUNTS OF 1 = 3.08476e+07
MAX TERMS = 1000
OBSERVED COUNTS (44)
1 3.08476e+07
2 3.75989e+06
3 23192
4 19884
5 2942
6 1842
7 726
8 501
9 213
10 198
11 94
12 76
13 44
14 40
15 23
16 25
17 16
18 12
19 4
20 8
21 5
22 4
23 6
24 1
26 1
27 1
28 1
35 1
43 1
[BOOTSTRAP ESTIMATES]
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ERROR: too many iterations, poor sample
so I guess the curve wasn't well defined enough to converge upon a reliable
projection. this does not imply good or bad.
Original comment by zack...@gmail.com
on 8 Jul 2014 at 4:47
I do not understand this, there were plenty of reads. Is it "too complex"
I wonder?
Original comment by cmnico...@gmail.com
on 8 Jul 2014 at 4:18
yeah, i had the same thought. there were so few dups that maybe not enough to
project.
Original comment by zack...@gmail.com
on 8 Jul 2014 at 4:20
Original comment by zack...@gmail.com
on 8 Jul 2014 at 11:34
Original issue reported on code.google.com by
cmnico...@gmail.com
on 8 Jul 2014 at 12:03