uf-hobi-informatics-lab / ClinicalTransformerRelationExtraction

A project for developing transformer-based models for clinical relation extraction
MIT License
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cross sentence experiment #28

Open lathashree01 opened 1 year ago

lathashree01 commented 1 year ago

Hi Team, @bugface @liangchh

I am trying to run the cross-sentence distance experiment.

I created the dataset by setting CSD to 3 in the data processing notebook. I ran the models and checked for the results. I think something is wrong because the results go from 90 to 9 for CSD 1, which seems extremely unlikely. As I checked the eval script, I saw the relations are fetched from all of the gold standard test files and scores are calculated. So the CSD 1 experiment's result is compared with all of the gold standard datasets, I think.

I am a little confused about this experiment. Could you please help me if I am missing anything or what I am doing wrong?

Any help would be greatly appreciated.

Thanks