run_transformer_batch_prediction.py requires label2idx.json file for input, but this file is missing from provided mimic-III trained models

uf-hobi-informatics-lab / SDoH_SODA

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run_transformer_batch_prediction.py requires label2idx.json file for input, but this file is missing from provided mimic-III trained models #7

Open stewacad000 opened 1 year ago

stewacad000 commented 1 year ago

I am trying to run the mimic-III pretrained BERT model with the ClinicalTransformerNER package but the package file run_tranformer_batch_prediction.py requires a file named label2idx.json, which is not contained in the model zip file. Is this file created in a step that I may have missed?

bugface commented 1 year ago

see https://github.com/uf-hobi-informatics-lab/ClinicalTransformerNER/issues/13