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ufal / clarin-dspace

clarin-dspace digital repository based on DSpace and LINDAT/CLARIN DSpace
http://lindat.cz
BSD 3-Clause "New" or "Revised" License
27 stars 18 forks source link

Reindex oai into Programs tab #136

Closed vidiecan closed 9 years ago

vidiecan commented 9 years ago
vidiecan commented 9 years ago

Cleanup the Programs tab and include raw dspace commands which will be run

kosarko commented 9 years ago

Programs seems to run, but this is displayed

Returned stdout:
Returned stderr:
log4j:ERROR setFile(null,true) call failed.
  java.io.FileNotFoundException: /debug.log (Permission denied)
    at java.io.FileOutputStream.open0(Native Method)
    at java.io.FileOutputStream.open(FileOutputStream.java:270)
    at java.io.FileOutputStream.<init>(FileOutputStream.java:213)
    at java.io.FileOutputStream.<init>(FileOutputStream.java:133)
    at org.apache.log4j.FileAppender.setFile(FileAppender.java:294)
    at org.apache.log4j.RollingFileAppender.setFile(RollingFileAppender.java:207)
    at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:165)
    at org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:307)
    at org.apache.log4j.xml.DOMConfigurator.parseAppender(DOMConfigurator.java:295)
    at org.apache.log4j.xml.DOMConfigurator.findAppenderByName(DOMConfigurator.java:176)
    at org.apache.log4j.xml.DOMConfigurator.findAppenderByReference(DOMConfigurator.java:191)
    at org.apache.log4j.xml.DOMConfigurator.parseChildrenOfLoggerElement(DOMConfigurator.java:523)
    at org.apache.log4j.xml.DOMConfigurator.parseCategory(DOMConfigurator.java:436)
    at org.apache.log4j.xml.DOMConfigurator.parse(DOMConfigurator.java:1004)
    at org.apache.log4j.xml.DOMConfigurator.doConfigure(DOMConfigurator.java:872)
    at org.apache.log4j.xml.DOMConfigurator.doConfigure(DOMConfigurator.java:778)
    at org.apache.log4j.helpers.OptionConverter.selectAndConfigure(OptionConverter.java:526)
    at org.apache.log4j.LogManager.<clinit>(LogManager.java:127)
    at org.apache.log4j.Logger.getLogger(Logger.java:117)
    at org.dspace.core.ConfigurationManager.<clinit>(ConfigurationManager.java:49)
    at org.dspace.app.launcher.ScriptLauncher.getConfig(ScriptLauncher.java:257)
    at org.dspace.app.launcher.ScriptLauncher.<clinit>(ScriptLauncher.java:35)
  log4j:ERROR setFile(null,true) call failed.
  java.io.FileNotFoundException: /info.log (Permission denied)
    at java.io.FileOutputStream.open0(Native Method)
    at java.io.FileOutputStream.open(FileOutputStream.java:270)
    at java.io.FileOutputStream.<init>(FileOutputStream.java:213)
    at java.io.FileOutputStream.<init>(FileOutputStream.java:133)
    at org.apache.log4j.FileAppender.setFile(FileAppender.java:294)
    at org.apache.log4j.RollingFileAppender.setFile(RollingFileAppender.java:207)
    at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:165)
    at org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:307)
    at org.apache.log4j.xml.DOMConfigurator.parseAppender(DOMConfigurator.java:295)
    at org.apache.log4j.xml.DOMConfigurator.findAppenderByName(DOMConfigurator.java:176)
    at org.apache.log4j.xml.DOMConfigurator.findAppenderByReference(DOMConfigurator.java:191)
    at org.apache.log4j.xml.DOMConfigurator.parseChildrenOfLoggerElement(DOMConfigurator.java:523)
    at org.apache.log4j.xml.DOMConfigurator.parseCategory(DOMConfigurator.java:436)
    at org.apache.log4j.xml.DOMConfigurator.parse(DOMConfigurator.java:1004)
    at org.apache.log4j.xml.DOMConfigurator.doConfigure(DOMConfigurator.java:872)
    at org.apache.log4j.xml.DOMConfigurator.doConfigure(DOMConfigurator.java:778)
    at org.apache.log4j.helpers.OptionConverter.selectAndConfigure(OptionConverter.java:526)
    at org.apache.log4j.LogManager.<clinit>(LogManager.java:127)
    at org.apache.log4j.Logger.getLogger(Logger.java:117)
    at org.dspace.core.ConfigurationManager.<clinit>(ConfigurationManager.java:49)
    at org.dspace.app.launcher.ScriptLauncher.getConfig(ScriptLauncher.java:257)
    at org.dspace.app.launcher.ScriptLauncher.<clinit>(ScriptLauncher.java:35)
  log4j:ERROR setFile(null,true) call failed.
  java.io.FileNotFoundException: /warning.log (Permission denied)
    at java.io.FileOutputStream.open0(Native Method)
    at java.io.FileOutputStream.open(FileOutputStream.java:270)
    at java.io.FileOutputStream.<init>(FileOutputStream.java:213)
    at java.io.FileOutputStream.<init>(FileOutputStream.java:133)
    at org.apache.log4j.FileAppender.setFile(FileAppender.java:294)
    at org.apache.log4j.RollingFileAppender.setFile(RollingFileAppender.java:207)
    at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:165)
    at org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:307)
    at org.apache.log4j.xml.DOMConfigurator.parseAppender(DOMConfigurator.java:295)
    at org.apache.log4j.xml.DOMConfigurator.findAppenderByName(DOMConfigurator.java:176)
    at org.apache.log4j.xml.DOMConfigurator.findAppenderByReference(DOMConfigurator.java:191)
    at org.apache.log4j.xml.DOMConfigurator.parseChildrenOfLoggerElement(DOMConfigurator.java:523)
    at org.apache.log4j.xml.DOMConfigurator.parseCategory(DOMConfigurator.java:436)
    at org.apache.log4j.xml.DOMConfigurator.parse(DOMConfigurator.java:1004)
    at org.apache.log4j.xml.DOMConfigurator.doConfigure(DOMConfigurator.java:872)
    at org.apache.log4j.xml.DOMConfigurator.doConfigure(DOMConfigurator.java:778)
    at org.apache.log4j.helpers.OptionConverter.selectAndConfigure(OptionConverter.java:526)
    at org.apache.log4j.LogManager.<clinit>(LogManager.java:127)
    at org.apache.log4j.Logger.getLogger(Logger.java:117)
    at org.dspace.core.ConfigurationManager.<clinit>(ConfigurationManager.java:49)
    at org.dspace.app.launcher.ScriptLauncher.getConfig(ScriptLauncher.java:257)
    at org.dspace.app.launcher.ScriptLauncher.<clinit>(ScriptLauncher.java:35)
  log4j:ERROR setFile(null,true) call failed.
  java.io.FileNotFoundException: /error.log (Permission denied)
    at java.io.FileOutputStream.open0(Native Method)
    at java.io.FileOutputStream.open(FileOutputStream.java:270)
    at java.io.FileOutputStream.<init>(FileOutputStream.java:213)
    at java.io.FileOutputStream.<init>(FileOutputStream.java:133)
    at org.apache.log4j.FileAppender.setFile(FileAppender.java:294)
    at org.apache.log4j.RollingFileAppender.setFile(RollingFileAppender.java:207)
    at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:165)
    at org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:307)
    at org.apache.log4j.xml.DOMConfigurator.parseAppender(DOMConfigurator.java:295)
    at org.apache.log4j.xml.DOMConfigurator.findAppenderByName(DOMConfigurator.java:176)
    at org.apache.log4j.xml.DOMConfigurator.findAppenderByReference(DOMConfigurator.java:191)
    at org.apache.log4j.xml.DOMConfigurator.parseChildrenOfLoggerElement(DOMConfigurator.java:523)
    at org.apache.log4j.xml.DOMConfigurator.parseCategory(DOMConfigurator.java:436)
    at org.apache.log4j.xml.DOMConfigurator.parse(DOMConfigurator.java:1004)
    at org.apache.log4j.xml.DOMConfigurator.doConfigure(DOMConfigurator.java:872)
    at org.apache.log4j.xml.DOMConfigurator.doConfigure(DOMConfigurator.java:778)
    at org.apache.log4j.helpers.OptionConverter.selectAndConfigure(OptionConverter.java:526)
    at org.apache.log4j.LogManager.<clinit>(LogManager.java:127)
    at org.apache.log4j.Logger.getLogger(Logger.java:117)
    at org.dspace.core.ConfigurationManager.<clinit>(ConfigurationManager.java:49)
    at org.dspace.app.launcher.ScriptLauncher.getConfig(ScriptLauncher.java:257)
    at org.dspace.app.launcher.ScriptLauncher.<clinit>(ScriptLauncher.java:35)
  log4j:WARN No appenders could be found for logger (org.dspace.core.ConfigurationManager).
  log4j:WARN Please initialize the log4j system properly.
  log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
  Exit code: [0]
vidiecan commented 9 years ago

The problem was that b2safe is shipped with log4j.xml which is loaded by log4j.LogManager by default unless:

Fixed by forking to https://github.com/ufal/lindat-B2SAFE-repository-package, changing xml name and one minor fix https://github.com/ufal/lindat-B2SAFE-repository-package/commit/ae3f638eac8d4de9d2e6e81dd5fa5b9e4bd28e39 and updating the jar with this version