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ufo-kit / tofu

Helper scripts for tomographic reconstruction using the ufo-core framework
GNU Lesser General Public License v3.0
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Reconstruct function in ufo-reconstruct gui does not work properly #90

Closed Sinapzy closed 1 year ago

Sinapzy commented 4 years ago

I am planning to run ufo-reconstruct gui I to quickly rebuild. Install： sudo python setup.py install sudo python setup.py install apt-get install python-qt4-gl sudo apt-get install python-qt4-gl Run： ufo-reconstruct gui The Center of rotation function works fine. sendpix1

But when I use the Reconstruct function in the GUI, the program reports an error as follows. Ufo:ERROR:/build/ufo-core-HmPqvn/ufo-core-0.15.1/ufo/ufo-remote-task.c:68:ufo_remote_task_setup: assertion failed: (priv->remote != NULL) 已放弃

sendpix2 sendpix3

I did not find a solution to the problem, ask for help, thank you.

tfarago commented 4 years ago

Which repository are you using? I mean where you do python setup.py install.

tfarago commented 4 years ago

I am asking because there should be no ufo-reconstruct script installed. Have you added some code yourself?

Sinapzy commented 4 years ago

I installed this version v0.9 (https://github.com/ufo-kit/tofu/releases).

When I run tofu , command not found is showed. I read the Readme of the installation package. ufo-reconstruct is used. So I tried this command. It worked. What should I do to sovle this problem? Thank you so much.

Sinapzy commented 4 years ago

我问，因为应该没有ufo-reconstruct安装脚本。您是否自己添加了一些代码？

I didn't add code myself,ufo-reconstruct guicomes from the Readme of the installation package v0.9.

tfarago commented 4 years ago

That's a very old version, please clone and install the fresh one: git clone https://github.com/ufo-kit/tofu.git

Sinapzy commented 4 years ago

That's a very old version, please clone and install the fresh one: git clone https://github.com/ufo-kit/tofu.git Thank you so much, running successfully! This is the result of reconstruction. result-01000-proj_FBP

There is still a problems in the reconstruction process. When I rebuild, the GUI automatically exits and I can't preview the results in the GUI. This is a command line prompt. o

Sinapzy commented 4 years ago

Projection after phase recovery，I can't rebuild it. sendpix0

tfarago commented 4 years ago

What do you mean by phase recovery?

Sinapzy commented 4 years ago

Phase recovery is an image processing algorithm that can help the projection recover the phase information，it can make the reconstruction result better.

tfarago commented 4 years ago

So you retrieve the phase and point the gui to the directory with those retrieved projections and it claims it cannot find any projections. Do you use UFO to retrieve the phase or some other tool? Is the ouput tif? Is it single-page or multi-page?

Sinapzy commented 4 years ago

Yes that's what you said.

  1. I did not find that UFO has the function of phase recovery.
  2. I use other tools to get the retrieved projection and it tif.
  3. I don't understand what single-page or multi-page means, can you please explain？
tfarago commented 4 years ago

By multi-page I mean there are more images saved in one file.

tfarago commented 1 year ago

There has been no activity for a long time, plus the GUI is not maintained anymore.