search

ufs-community / ufs-mrweather-app

UFS Medium-Range Weather Application
Other
23 stars 23 forks source link

Runs fail to start on stampede2 #141

Closed MuayScience closed 4 years ago

MuayScience commented 4 years ago

I was able to run through the instructions to build and submit on stampede2, but my jobs failed to run because they could not find certain NCEPLIBS_DIR and UFS_INPUT. So far as I can tell they are set correctly - output is below:

login1(1182)$ cat chgres.DORIAN_C96_GFSv15p2 NCEPLIBS_DIR needs to be set! Exiting ... login1(1183)$ echo $NCEPLIBS_DIR /work/02441/bcash/stampede2/NCEPLIBS-ufs-v1.0.0 login1(1184)$ cat run.DORIAN_C96_GFSv15p2 ERROR: Undefined env var 'UFS_INPUT' login1(1185)$ echo $UFS_INPUT /scratch/02441/bcash/inputs

MuayScience commented 4 years ago

Update: I just saw #137 which explains this problem, but I am going to leave this open as (at least) a documentation issue since if I hadn't happened to look at that closed issue I don't think I would have been likely to stumble across it.

ceceliadid commented 4 years ago

@MuayScience the Getting Started does say you need to source that script in your .bashrc or equiv and gives you the line to put in there, but I can make it more noticeable.

ceceliadid commented 4 years ago

@MuayScience do you think the bold makes it visible enough?

MuayScience commented 4 years ago

@ceceliadid - That's much better, thanks!

uturuncoglu commented 4 years ago

Hi Ben,

You need to set those environment variables as well as source command for nceplibs in your .bashrc. It is know problem related with TACC systems. You could find information in QuickStart guide in app documentation.

—Ufuk

On Mar 6, 2020, at 7:08 PM, Benjamin A Cash notifications@github.com wrote:

 I was able to run through the instructions to build and submit on stampede2, but my jobs failed to run because they could not find certain NCEPLIBS_DIR and UFS_INPUT. So far as I can tell they are set correctly - output is below:

login1(1182)$ cat chgres.DORIAN_C96_GFSv15p2 NCEPLIBS_DIR needs to be set! Exiting ... login1(1183)$ echo $NCEPLIBS_DIR /work/02441/bcash/stampede2/NCEPLIBS-ufs-v1.0.0 login1(1184)$ cat run.DORIAN_C96_GFSv15p2 ERROR: Undefined env var 'UFS_INPUT' login1(1185)$ echo $UFS_INPUT /scratch/02441/bcash/inputs

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or unsubscribe.