htan2013
commented
2 years ago Error resolved by set "export ESMFMKFILE="/path_of_your_esmf.mk/esmf.mk".
New error occured:
Warning: Type mismatch in argument 'grid' at (1); passed REAL(4) to REAL(8) [-Wargument-mismatch] [ 41%] Building Fortran object sorc/sfc_climo_gen.fd/CMakeFiles/sfc_climo_gen_lib.dir/source_grid.F90.o [ 38%] Building Fortran object sorc/ncep_post.fd/CMakeFiles/upp.dir/CALRCH.f.o [ 39%] Building Fortran object sorc/ncep_post.fd/CMakeFiles/upp.dir/CALSTRM.f.o [ 40%] Building Fortran object sorc/ncep_post.fd/CMakeFiles/upp.dir/CALTAU.f.o [ 42%] Building Fortran object sorc/grid_tools.fd/regional_esg_grid.fd/CMakeFiles/regional_esg_grid.dir/pmat4.f90.o [ 40%] Building Fortran object sorc/ncep_post.fd/CMakeFiles/upp.dir/CALTHTE.f.o [ 41%] Building Fortran object sorc/ncep_post.fd/CMakeFiles/upp.dir/CALVESSEL.f.o [ 41%] Building Fortran object sorc/ncep_post.fd/CMakeFiles/upp.dir/CALVIS.f.o [ 42%] Building Fortran object sorc/ncep_post.fd/CMakeFiles/upp.dir/CALVIS_GSD.f.o [ 42%] Building Fortran object sorc/sfc_climo_gen.fd/CMakeFiles/sfc_climo_gen_lib.dir/model_grid.F90.o [ 43%] Building Fortran object sorc/ncep_post.fd/CMakeFiles/upp.dir/CALWXT_DOMINANT.f.o [ 44%] Building Fortran object sorc/ncep_post.fd/CMakeFiles/upp.dir/CALWXT_EXPLICIT.f.o [ 43%] Building Fortran object sorc/chgres_cube.fd/CMakeFiles/chgres_cube_lib.dir/grib2_util.F90.o [ 43%] Building Fortran object sorc/chgres_cube.fd/CMakeFiles/chgres_cube_lib.dir/static_data.F90.o [ 43%] Building Fortran object sorc/fvcom_tools.fd/CMakeFiles/fvcom_tools_lib.dir/module_nwp_base.f90.o /lcrc/project/OW_UFS/UFS_2.0/ufs-srweather-app/src/UFS_UTILS/sorc/fvcom_tools.fd/module_nwp_base.f90:16:37:
16 | use kinds, only: r_kind, r_single, rmissing | 1 Error: Symbol 'rmissing' referenced at (1) not found in module 'kinds' make[5]: [sorc/fvcom_tools.fd/CMakeFiles/fvcom_tools_lib.dir/module_nwp_base.f90.o] Error 1 make[4]: [sorc/fvcom_tools.fd/CMakeFiles/fvcom_tools_lib.dir/all] Error 2 make[4]: *** Waiting for unfinished jobs.... [ 44%] Building Fortran object sorc/ncep_post.fd/CMakeFiles/upp.dir/CALWXT.f.o /lcrc/project/OW_UFS/UFS_2.0/ufs-srweather-app/src/UPP/sorc/ncep_post.fd/CALWXT.f:101:19:
101 | DO 800 I=1,IM
The build log is attached. build.pdf
natalie-perlin
Description
Dear all, I tried to compile UFS SRW and I met this error when it comes to compilation of ESMF:
-- Found MPI_C: /soft/openmpi/4.1.2/bebop-bdw/bin/mpicc (found version "3.1") -- Found MPI_Fortran: /gpfs/fs1/home/software/openmpi/4.1.2/bebop-bdw/lib/libmpi_usempif08.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found MPI_CXX: /soft/openmpi/4.1.2/bebop-bdw/bin/mpicxx (found version "3.1") -- Found NetCDF: /lcrc/project/OW_UFS/HPC-Stack/include (found version "4.7.4") found components: Fortran -- FindNetCDF defines targets: -- - NetCDF_VERSION [4.7.4] -- - NetCDF_PARALLEL [TRUE] -- - NetCDF_C_CONFIG_EXECUTABLE [/lcrc/project/OW_UFS/HPC-Stack/bin/nc-config] -- - NetCDF::NetCDF_C [SHARED] [Root: /lcrc/project/OW_UFS/HPC-Stack] Lib: /lcrc/project/OW_UFS/HPC-Stack/lib/libnetcdf.so -- - NetCDF_Fortran_CONFIG_EXECUTABLE [/lcrc/project/OW_UFS/HPC-Stack/bin/nf-config] -- - NetCDF::NetCDF_Fortran [SHARED] [Root: /lcrc/project/OW_UFS/HPC-Stack] Lib: /lcrc/project/OW_UFS/HPC-Stack/lib/libnetcdff.so -- Found MPI_Fortran: /gpfs/fs1/home/software/openmpi/4.1.2/bebop-bdw/lib/libmpi_usempif08.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found OpenMP_Fortran: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: Fortran -- Found bacio: /lcrc/project/OW_UFS/HPC-Stack/lib/libbacio_4.a (found version "2.4.0") -- Found crtm: /lcrc/project/OW_UFS/HPC-Stack/lib/libcrtm.a (found version "2.3.0") -- Found NetCDF: /lcrc/project/OW_UFS/HPC-Stack/include (found suitable version "4.7.4", minimum required is "4.3.3") found components: C Fortran -- FindNetCDF defines targets: -- - NetCDF_VERSION [4.7.4] -- - NetCDF_PARALLEL [TRUE] -- - NetCDF_C_CONFIG_EXECUTABLE [/lcrc/project/OW_UFS/HPC-Stack/bin/nc-config] -- - NetCDF::NetCDF_C [SHARED] [Root: /lcrc/project/OW_UFS/HPC-Stack] Lib: /lcrc/project/OW_UFS/HPC-Stack/lib/libnetcdf.so -- - NetCDF_Fortran_CONFIG_EXECUTABLE [/lcrc/project/OW_UFS/HPC-Stack/bin/nf-config] -- - NetCDF::NetCDF_Fortran [SHARED] [Root: /lcrc/project/OW_UFS/HPC-Stack] Lib: /lcrc/project/OW_UFS/HPC-Stack/lib/libnetcdff.so -- Found ZLIB: /lcrc/project/OW_UFS/HPC-Stack/lib/libz.a (found version "1.2.11") -- Found MPI: TRUE (found version "3.1") found components: C Fortran -- Found ESMF library: /lcrc/project/OW_UFS/HPC-Stack/lib/libesmf.a CMake Error at /gpfs/fs1/software/centos7/spack-latest/opt/spack/linux-centos7-x86_64/gcc-6.5.0/cmake-3.20.3-vedypwm/share/cmake-3.20/Modules/FindPackageHandleStandardArgs.cmake:230 (message): Could NOT find ESMF: Found unsuitable version "..", but required is at least "8.0.0" (found , ) Call Stack (most recent call first): /gpfs/fs1/software/centos7/spack-latest/opt/spack/linux-centos7-x86_64/gcc-6.5.0/cmake-3.20.3-vedypwm/share/cmake-3.20/Modules/FindPackageHandleStandardArgs.cmake:592 (_FPHSA_FAILURE_MESSAGE) cmake/FindESMF.cmake:125 (find_package_handle_standard_args) CMakeLists.txt:57 (find_package)
-- Configuring incomplete, errors occurred! See also "/lcrc/project/OW_UFS/UFS_2.0/ufs-srweather-app/build/src/UFS_UTILS/src/UFS_UTILS-build/CMakeFiles/CMakeOutput.log". -- Found PNG: /lcrc/project/OW_UFS/HPC-Stack/lib64/libpng.a (found version "1.6.35") -- Found g2: /lcrc/project/OW_UFS/HPC-Stack/lib64/libg2_4.a (found version "3.4.5") make[2]: [src/UFS_UTILS/src/UFS_UTILS-stamp/UFS_UTILS-configure] Error 1 make[1]: [src/CMakeFiles/UFS_UTILS.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... -- Found g2tmpl: /lcrc/project/OW_UFS/HPC-Stack/lib/libg2tmpl.a (found version "1.10.0") -- Found bacio: /lcrc/project/OW_UFS/HPC-Stack/lib/libbacio_4.a (found version "2.4.0") -- Found bacio: /lcrc/project/OW_UFS/HPC-Stack/lib/libbacio_4.a (found version "2.4.0") -- Found w3emc: /lcrc/project/OW_UFS/HPC-Stack/lib64/libw3emc_4.a (found version "2.9.2") -- Found MPI: TRUE (found version "3.1") found components: Fortran -- Found nemsio: /lcrc/project/OW_UFS/HPC-Stack/lib64/libnemsio.a (found version "2.5.4") -- Found sfcio: /lcrc/project/OW_UFS/HPC-Stack/lib/libsfcio.a (found version "1.4.0") -- Found sigio: /lcrc/project/OW_UFS/HPC-Stack/lib/libsigio.a (found version "2.3.0") -- Found OpenMP_Fortran: -fopenmp (found version "4.5") -- Found sp: /lcrc/project/OW_UFS/HPC-Stack/lib/libsp_4.a (found version "2.3.3") -- Found w3nco: /lcrc/project/OW_UFS/HPC-Stack/lib/libw3nco_4.a (found version "2.4.0")
Steps to Reproduce
Please provide detailed steps for reproducing the issue.
I used these modules: 1) cmake/3.20.3-vedypwm 2) openmpi/4.1.2 3) anaconda/4.4.0 4) gcc/9.2.0-pkmzczt And I put export PATH="/lcrc/project/OW_UFS/HPC-Stack/bin:$PATH" export LD_LIBRARY_PATH="/lcrc/project/OW_UFS/HPC-Stack/lib:$LD_LIBRARY_PATH" export CMAKE_PREFIX_PATH="/lcrc/project/OW_UFS/HPC-Stack" in bashrc
Additional Context
The build log is attached. build.out.txt
Thanks in advance, Haochen