Add option to specify fv3atm history and inline post files output directory

[DusanJovic-NOAA]

Commit Queue Requirements:

• [x] Fill out all sections of this template.
• [x] All sub component pull requests have been reviewed by their code managers.
• [x] Run the full Intel+GNU RT suite (compared to current baselines) on either Hera/Derecho/Hercules

• [x] Commit 'test_changes.list' from previous step

  Description:

  Add new model_configure option (fv3atm_output_dir) to specify directory in which all fv3atm history and inline post files will be saved. Fix fv3atm ci workflow (remove unnecessary renaming of UPP doc directory)

Commit Message:

* UFSWM - Add new model_configure option (fv3atm_output_dir) to specify directory in which all fv3atm history and inline post files will be saved.
  * FV3 - Add new model_configure option (fv3atm_output_dir) to specify directory in which all history and inline post files will be saved.

Priority:

• Normal

Git Tracking

UFSWM:

• 2084

Sub component Pull Requests:

• FV3: NOAA-EMC/fv3atm#822

UFSWM Blocking Dependencies:

• None

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Changes

Regression Test Changes (Please commit test_changes.list):

• No Baseline Changes.

Input data Changes:

• None.

Library Changes/Upgrades:

• No Updates

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Testing Log:

• RDHPCS
  • [ ] Hera
  • [ ] Orion
  • [ ] Hercules
  • [ ] Jet
  • [ ] Gaea
  • [ ] Derecho
• WCOSS2
  • [ ] Dogwood/Cactus
  • [ ] Acorn
• [ ] CI
• [ ] opnReqTest (complete task if unnecessary)

[DeniseWorthen]

@DusanJovic-NOAA I had also created issue #2084 which I think could be closed by this PR also.

[DusanJovic-NOAA]

Regression test passed on Hera. RegressionTests_hera.log