Closed amhanson9 closed 2 months ago
@emkaser this should be working. I couldn't test it fully since I can't replicate the error with how much current computer setup handles long paths. But the try/except logic was in place before then to let the full test pass, and I confirmed having the MD5 be FileNotFound.... works as expected with merging. To test with the real data, use collection ms4472.
In validate_manifest(), had a FileNotFoundError on several files when attempting to read in order to calculate the md5. Add error handling to assign 'FileNotFoundError-cannot-calculate-md5' as the md5, so that the error is part of the manifest log. Also do this in validate_bag_manifest().