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uhlerlab / synthetic_lethality

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Data processing #1

Open BastLem opened 10 months ago

BastLem commented 10 months ago

Hi, I was wondering if by any chance you could share your code for processing the data?

Suhoja commented 5 months ago

Hi @ccai1,

I was wondering about the same thing. Currently the code in the repository is difficult to use, as it cannot be tested without data formatted according to how you've preprocessed the DepMap data into the hickle files.

Could you please share the pre-processing steps for the DepMap data, so that we could properly test your code? I find your approach very interesting and am keen to test it myself.

ccai1 commented 5 months ago

Hey, sorry for the late response! I just added a data processing file. Lmk if that helps and if you can run the code.