uhlmanngroup / splinedist

SplineDist: Automated Cell Segmentation with Spline Curves
BSD 3-Clause "New" or "Revised" License
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Difficulty opening splinedist trained model in napari #15

Open ykhan52 opened 7 months ago

ykhan52 commented 7 months ago

Hello! I was just looking for some guidence on importing a custom trained model (bear with me I am new to this)

So utilizing the training scripts found in the https://github.com/uhlmanngroup/splinedist repository I have trained a model to detect signal for CD68 in immunolflourescence trained images. The training has seemingly worked and I have a file exported for the model.

Screen Shot 2024-02-06 at 5 23 26 PM

I followed the instructions in https://www.youtube.com/watch?v=MY1pHXuowIA and added the necessary code to the napari_splinedist_config.json in the config folder.

Screen Shot 2024-02-06 at 5 22 59 PM

But the model is not loading

Screen Shot 2024-02-06 at 5 24 17 PM

Is there anything else I have to do to have the model show up in the napari plugin. Also is there a SplineDist plugin for ImageJ that I could use? Or another platform other than napari? Thank you for the help!