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ui-icts / aptamer-web

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CreateGraph failing #1

Open thielwh opened 5 years ago

thielwh commented 5 years ago

The CreateGraph will fail frequently when more than 1,250 sequences are analyzed: Examples: 1) Any dataset >2,000 sequence will fail with any parameters 2) Datasets >1,500 will usually run with "seed" option but fail otherwise (e.g. "Cibiel PLoSOne 2014 - 1615.struct.fa" runs with "-t edit -e 1 --seed" and but fails with "-t edit -e 1")

Thoughts: Is this due to memory issues while the script is running? If so, what are possible options?

chrisortman commented 5 years ago

@thielwh I think I've seen a few notifications generated by some monitoring software we run that indicate it is memory or storage. Currently the application is hosted on a rather small test server we have so it is probably worth looking into moving it to a larger instance.

thielwh commented 5 years ago

Moving to a larger server sounds like a good idea. What would the options and associated costs be?