pip3 version of preprocess_interface.py has incorrect line 84

uio-bmi / graph_peak_caller

ChIP-seq peak caller for reads mapped to a graph-based reference genome

BSD 3-Clause "New" or "Revised" License

18 stars 8 forks source link

pip3 version of preprocess_interface.py has incorrect line 84 #15

Open adadiehl opened 1 year ago

adadiehl commented 1 year ago

pip3 version of preprocess_interface.py returns list, not string: reads_base_name = args.vg_json_reads_file_name.split(".")[0:-1] Resulting mismatched types in string concatenation at line 102 cause program to crash. This appears to be fixed in the main repository: reads_base_name = '.'.join(args.vg_json_reads_file_name.split(".")[0:-1])

Please release a patch to pip!