Kmer abundance encoder - Githubissues

uio-bmi / immuneML

immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

https://immuneml.uio.no

GNU Affero General Public License v3.0

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Closed LonnekeScheffer closed 2 years ago

LonnekeScheffer commented 2 years ago

Merged in k-mer abundance branch:

made k-mer based Emerson method
added several reports for Chakri
updated analysis paths figure 🎉
removed an old obsolete report (was supposed to be for use case 3 when we planned to use DeepRC, but it was never used, had no tests, and made the analysis paths figure really cluttered..)