Closed alxcost closed 10 months ago
Hi Alex,
Thanks for the PR! We have tests (in the tests folder) that should pass before merging it (here are the results of the run: https://github.com/uio-bmi/immuneML/actions/runs/5511689451/jobs/10061986178?pr=157). I can also take a look and fix the versions from the next week :)
Hi Milena,
The tests were very helpful! It seems I wasn't importing the new sklearn module quite right.
I also hit an issue with h5py (https://pypi.org/project/h5py/) in the DeepRC requirements and Python 3.10. The latest version seems to fix this.
I'll try to submit a new commit soon 😄.
All the best, Alex
fixed with the latest update now, thanks for the help, Alex!
Hi folks,
I ran into a few issues running ImmuneML with Python 3.10. It was complaining about gensim but bumping its version to 4.3 seems to have fixed it (according to https://pypi.org/project/gensim/).
Also updated a variable used by sklearn which seems to have mysteriously changed its name (couldn't fix documentation regarding this issue so I had to dig a bit into their source-code).
It seems to work fine, but are there any formal tests that I could run to make sure everything is working?
All the best, Alex