search

uio-bmi / immuneML

immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
https://immuneml.uio.no
GNU Affero General Public License v3.0
62 stars 29 forks source link

ImmuneML requires scikit-learn==1.2.2 to work, the default pip install uses scikit-learn==1.3.0 #158

Closed CokieLee closed 1 year ago

CokieLee commented 1 year ago

Hello, I noticed that the default process of installing immuneml using pip didn't work at first because the statement "from sklearn.metrics import SCORERS" (in the file /immuneML/ml_methods/SklearnMethod.py) causes a runtime error (shows in the attached photo). 8_1_23_ImmuneMLError

It appears that statement is no longer a supported syntax by scikit-learn. After changing my scikit-learn version from default (most up to date) version 1.3.0, to version 1.2.2, ImmuneML appeared to work as intended.

I was using python version 3.9.6 with a virtual environment, on a linux machine (Red hat enterprise server), and pip version 23.2.1. I believe all the other packages installed were the most recent available versions.

Just wanted to let you guys know, as it had me confused for a minute, Thanks!

pavlovicmilena commented 1 year ago

Thanks for letting us know! We hope to fix this soon :)

pavlovicmilena commented 1 year ago

This is fixed in version 2.2.6. Sorry for the slow response!