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uio-bmi / immuneML

immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
https://immuneml.uio.no
GNU Affero General Public License v3.0
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likely_confounders #76

Closed ghadialhajj closed 3 years ago

ghadialhajj commented 3 years ago

Plot the distribution of misclassifications with respect to different values of likely confounders

pavlovicmilena commented 3 years ago

@ghadialhajj could you make sure that the tests are passing? It seems that the test for the report you added is failing. It seems that the problem is the label name (signal_disease) which was recently updated not to include the "signal" prefix, but rather only what the user specifies in the YAML (which would be "disease" in this case). Could you maybe check this? :)

LonnekeScheffer commented 3 years ago

I ran the tests for this branch locally and they're all passing for me, so I think it can be merged in?

pavlovicmilena commented 3 years ago

this is the branch where I added get_metadata for other dataset types (so that the report can work as is for any dataset type), just need to add tests as well before merging [hopefully today] :) but yes, Ghadi has finished the report 🎉

ghadialhajj commented 3 years ago

Great :tada: :muscle: ! thank you for your help. Please let me know if there is anything else I can do :+1: