CompAIRR integration - Githubissues

uio-bmi / immuneML

immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

https://immuneml.uio.no

GNU Affero General Public License v3.0

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Closed LonnekeScheffer closed 3 years ago

LonnekeScheffer commented 3 years ago

Added a new encoder - EditDistanceEncoder, which internally uses CompAIRR to calculate repertoire overlap
Added PrecomputedKNN which is directly compatible with DistanceEncoder and EditDistanceEncoder (without having to specify precomputed=true, which may be hard to guess for a user)
Minor simplifications in DistanceEncoder and compatibility fixes in DesignMatrixExporter

LonnekeScheffer commented 3 years ago

added somethng small to the docs now afterwards because I forgot it earlier, but I am done now :)