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uio-cels / NucDiff

In-depth characterization and annotation of differences between two sets of DNA sequences
Mozilla Public License 2.0
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Hello #29

Closed hassantarabai closed 1 year ago

hassantarabai commented 1 year ago

Hello,

I am using nucdiff to compare between two closely related genomes. Its working with the masked genomes but when using the original unmasked genomes, i am ending up with the following error: ERROR: 'contig1010' not found in reference file

Any advice how to resolve it ?

Thank you,

kseniakh commented 1 year ago

Hello,

This is something wrong with nucmer and not nucdiff. Try to look here: https://github.com/mummer4/mummer/issues/125 . May be it can be useful for you as well.