Error while downloading hmmdata using piggyback

[hites77]

Following error occur while i ran the command: piggyback::pb_download("hmm.tar.gz",repo = "ukaraoz/test",dest = file.path(.libPaths(),"microtrait", "extdata"))

Error: Error in $<-.data.frame(*tmp*, "dest", value = c("/usr/local/lib/R/site-library/microtrait/extdata", : replacement has 3 rows, data has 0 In addition: Warning messages: 1: In get_token() : Using default public GITHUB_TOKEN. Please set your own token 2: In piggyback::pb_download("hmm.tar.gz", repo = "ukaraoz/test", dest = file.path(.libPaths(), : file(s) hmm.tar.gz not found in repo ukaraoz/test

[cliffbueno]

I got a similar error after running prep.hmmmodels()

Error in value[3L] : Cannot access release data for repository ukaraoz/test. Check that you have set a GITHUB_TOKEN and that at least one release on your GitHub repository page. In addition: Warning message: In get_token() : Using default public GITHUB_TOKEN. Please set your own token

[deanpettinga]

hey @cliffbueno and @hites77, I also was having an issue with prep.hmmmodels(). I got the following error:

Error: <rlib_error: GitHub PAT must have one of these forms:
  * 40 hexadecimal digits (older PATs)
  * A 'ghp_' prefix followed by 36 to 251 more characters (newer PATs)>

As it turns out, this is not an issue with the microTrait package. what you probably need to do is generate a new Personal Access Token (PAT) that conforms to the requirements listed in the error. I had to do the same thing because my GitHub password/token saved by R did not conform to these token formatting and complexity requirements. i followed the advice in this issue: https://github.com/aaronpeikert/repro/issues/65, which solved my problem.

good luck!

[ukaraoz]

Hi, sorry it took a while to get to the bottom of this. After github changed the authentication method, the piggyback download function failed with .token=NULL option. I took piggyback offline for now, and replaced it with a hard link to the hmm database.