Throw Warnings or Errors if used with a Pedigree that contains phenotypic data in the sixth column

ultimatesource / denovogear

A program to detect denovo-variants using next-generation sequencing data.

http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2611.html

GNU General Public License v3.0

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Throw Warnings or Errors if used with a Pedigree that contains phenotypic data in the sixth column #22

Open reedacartwright opened 9 years ago

reedacartwright commented 9 years ago

Currently dng call assumes that the somatic tree is in column 6. If a user submits an un-edited pedigree, column 6 might contain phenotype 0/1 data. Therefore, we should move the location of the somatic tree to some where else.

reedacartwright commented 9 years ago

Review of other programs indicates that some support phenotypic information in multiple columns. Therefore we need to detect when someone uses such a pedigree and throw a warning/error.