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ultimatesource / denovogear

A program to detect denovo-variants using next-generation sequencing data.
http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2611.html
GNU General Public License v3.0
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Added integration test for dng Loglike #242

Closed jgarciamesa closed 6 years ago

jgarciamesa commented 6 years ago

Added integration tests for dng Loglike: BAM, CRAM, TAD and VCF.

codecov[bot] commented 6 years ago

Codecov Report

Merging #242 into develop will increase coverage by 3.61%. The diff coverage is 100%.

Impacted file tree graph

@@             Coverage Diff             @@
##           develop     #242      +/-   ##
===========================================
+ Coverage    68.17%   71.78%   +3.61%     
===========================================
  Files           70       70              
  Lines         6533     6533              
  Branches      1142     1142              
===========================================
+ Hits          4454     4690     +236     
+ Misses        1613     1372     -241     
- Partials       466      471       +5
Impacted Files Coverage Δ
src/lib/task/loglike.cc 83.91% <100%> (+83.91%) :arrow_up:
src/include/dng/hts/bam.h 57.54% <0%> (+0.94%) :arrow_up:
src/include/dng/utility.h 90% <0%> (+2%) :arrow_up:
src/include/dng/io/fasta.h 56.25% <0%> (+2.08%) :arrow_up:
src/lib/stats.cc 91.78% <0%> (+2.73%) :arrow_up:
src/include/dng/peeling.h 89.65% <0%> (+3.44%) :arrow_up:
src/include/dng/io/bam.h 76% <0%> (+4%) :arrow_up:
src/include/dng/io/bcf.h 70.37% <0%> (+4.62%) :arrow_up:
src/include/dng/pedigree.h 71.42% <0%> (+5.35%) :arrow_up:
src/include/dng/multithread.h 90% <0%> (+6.66%) :arrow_up:
... and 5 more

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