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ultimatesource / denovogear

A program to detect denovo-variants using next-generation sequencing data.
http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2611.html
GNU General Public License v3.0
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"make testdata" fails, /denovogear/build/testdata.tar.gz hash doesn't match #304

Open MurphyDavid opened 4 years ago

MurphyDavid commented 4 years ago

Hi

When trying to set up denovogear on my local machine I'm getting some errors.

Command series:

git clone https://github.com/ultimatesource/denovogear cd denovogear/ cd build/ cmake -DCMAKE_BUILD_TYPE=Release .. make -j4 make testdata


-- [download 100% complete]
-- downloading... done
CMake Error at Tests/testdata/src/testdata-stamp/verify-testdata.cmake:27 (message):
  error: SHA256 hash of

    /hades/dmurphy/triosolver/denovogear/build/testdata.tar.gz

  does not match expected value

    expected: f240e1b1e84646ef3ec6eb67113dc0cf71b804c04f96983ee8a802b2b791676a
      actual: e75baaebe62a0eff5693010546fbbf5842c7ce41b06001bca8786ec1e6e3e8df

Tests/CMakeFiles/testdata.dir/build.make:89: recipe for target 'Tests/testdata/src/testdata-stamp/testdata-download' failed
make[3]: *** [Tests/testdata/src/testdata-stamp/testdata-download] Error 1
CMakeFiles/Makefile2:433: recipe for target 'Tests/CMakeFiles/testdata.dir/all' failed
make[2]: *** [Tests/CMakeFiles/testdata.dir/all] Error 2
CMakeFiles/Makefile2:440: recipe for target 'Tests/CMakeFiles/testdata.dir/rule' failed
make[1]: *** [Tests/CMakeFiles/testdata.dir/rule] Error 2
Makefile:299: recipe for target 'testdata' failed
make: *** [testdata] Error 2

Most of the tests then fail but from the log it's the same hash failure followed by missing data causing most of the failures.

1:Build.testdata 8:DngCall.Bam 9:DngCall.Vcf 10:DngCall.Cram 12:DngLoglike.Bam 13:DngLoglike.Vcf 14:DngLoglike.Cram 16:DngDnm.Auto 18:DngPhaser.Data 20:Unit.hts::bam 21:Unit.hts::bcf