pipeline_id = "a10cad1d-b3c6-4a6e-8f44-0605fbe269d5"
# file_id="0a7b29b7-ae8f-4198-85f3-0743f8290a25" # works fine
file_id = "31a36b7a-f034-4bbc-ba3e-229d6ab866f4"
# Enter a context with an instance of the API client
with ApiClient(get_icav2_configuration()) as api_client:
# Create an instance of the API class
api_instance = PipelineApi(api_client)
# example passing only required values which don't have defaults set
try:
# Download the contents of a pipeline file.
api_response: file_type = api_instance.download_pipeline_file_content(pipeline_id, file_id)
except ApiException as e:
logger.error("Exception when calling PipelineApi->download_pipeline_file_content: %s\n" % e)
raise ApiException
Gives the following traceback
Traceback (most recent call last):
File "/home/alexiswl/GitHub/UMCCR/icav2-cli-plugins/src/icav2_cli_plugins/run/icav2-cli-plugins.py", line 14, in <module>
sys.exit(main())
^^^^^^
File "/home/alexiswl/GitHub/UMCCR/icav2-cli-plugins/src/icav2_cli_plugins/utils/cli.py", line 113, in main
_dispatch()
File "/home/alexiswl/GitHub/UMCCR/icav2-cli-plugins/src/icav2_cli_plugins/utils/cli.py", line 105, in _dispatch
subcommand_obj()
File "/home/alexiswl/GitHub/UMCCR/icav2-cli-plugins/src/icav2_cli_plugins/subcommands/__init__.py", line 723, in __call__
self.subcommand_obj()
File "/home/alexiswl/GitHub/UMCCR/icav2-cli-plugins/src/icav2_cli_plugins/subcommands/projectpipelines/create_wes_input_template.py", line 230, in __call__
self.write_output_wes_template()
File "/home/alexiswl/GitHub/UMCCR/icav2-cli-plugins/src/icav2_cli_plugins/subcommands/projectpipelines/create_wes_input_template.py", line 489, in write_output_wes_template
"inputs": self.get_input_template_as_commented_map()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/alexiswl/GitHub/UMCCR/icav2-cli-plugins/src/icav2_cli_plugins/subcommands/projectpipelines/create_wes_input_template.py", line 273, in get_input_template_as_commented_map
download_nextflow_schema_input_json_from_pipeline_id(
File "/home/alexiswl/GitHub/UMCCR/wrapica/src/wrapica/utils/nextflow_helpers.py", line 604, in download_nextflow_schema_input_json_from_pipeline_id
download_pipeline_file(
File "/home/alexiswl/GitHub/UMCCR/wrapica/src/wrapica/pipelines/functions/pipelines_functions.py", line 264, in download_pipeline_file
api_response: file_type = api_instance.download_pipeline_file_content(pipeline_id, file_id)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/alexiswl/PyCharmProjects/UMCCR/icav2-cli-plugins/venv/lib/python3.12/site-packages/libica/openapi/v2/api/pipeline_api.py", line 548, in download_pipeline_file_content
return self.download_pipeline_file_content_endpoint.call_with_http_info(**kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/alexiswl/PyCharmProjects/UMCCR/icav2-cli-plugins/venv/lib/python3.12/site-packages/libica/openapi/v2/api_client.py", line 854, in call_with_http_info
return self.api_client.call_api(
^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/alexiswl/PyCharmProjects/UMCCR/icav2-cli-plugins/venv/lib/python3.12/site-packages/libica/openapi/v2/api_client.py", line 409, in call_api
return self.__call_api(resource_path, method,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/alexiswl/PyCharmProjects/UMCCR/icav2-cli-plugins/venv/lib/python3.12/site-packages/libica/openapi/v2/api_client.py", line 224, in __call_api
return_data = self.deserialize(
^^^^^^^^^^^^^^^^^
File "/home/alexiswl/PyCharmProjects/UMCCR/icav2-cli-plugins/venv/lib/python3.12/site-packages/libica/openapi/v2/api_client.py", line 314, in deserialize
return deserialize_file(response.data, self.configuration,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/alexiswl/PyCharmProjects/UMCCR/icav2-cli-plugins/venv/lib/python3.12/site-packages/libica/openapi/v2/model_utils.py", line 1405, in deserialize_file
with open(path, "wb") as f:
^^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory: '/tmp/assets/schema_input.json'
Steps to reproduce
Gives the following traceback