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umccr / RNAsum

Pipeline for generating RNAseq-based cancer patient reports
https://umccr.github.io/RNAsum/
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Upgrade bioconductor version #100

Closed alexiswl closed 1 year ago

alexiswl commented 1 year ago

The docker build takes a long time because the existing bioconductor URLs were since deprecated and was forced to retrieve archive data

Details ``` #21 2.183 * Querying repositories for available source packages ... Done! #21 21.81 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/RcppEigen/RcppEigen_0.3.3.9.1.tar.gz' ... #21 21.92 OK [downloaded 1.6 Mb in 0.12 seconds] #21 35.86 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/Matrix/Matrix_1.4-1.tar.gz' ... #21 36.26 OK [downloaded 2.7 Mb in 0.4 seconds] #21 51.03 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/lattice/lattice_0.20-45.tar.gz' ... #21 51.17 OK [downloaded 390.1 Kb in 0.14 seconds] #21 65.42 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/Rcpp/Rcpp_1.0.8.3.tar.gz' ... #21 65.66 OK [downloaded 2.9 Mb in 0.24 seconds] #21 80.31 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/hwriter/hwriter_1.3.2.tar.gz' ... #21 80.49 OK [downloaded 111.3 Kb in 0.18 seconds] #21 93.79 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/fansi/fansi_1.0.3.tar.gz' ... #21 93.90 OK [downloaded 469.9 Kb in 0.1 seconds] #21 107.4 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/xml2/xml2_1.3.3.tar.gz' ... #21 107.6 OK [downloaded 277.3 Kb in 0.22 seconds] #21 121.1 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/R.methodsS3/R.methodsS3_1.8.1.tar.gz' ... #21 121.3 OK [downloaded 23.2 Kb in 0.18 seconds] #21 135.0 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/cachem/cachem_1.0.6.tar.gz' ... #21 135.1 OK [downloaded 24.8 Kb in 80 milliseconds] #21 149.3 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/rlang/rlang_1.0.2.tar.gz' ... #21 149.4 OK [downloaded 707.8 Kb in 0.15 seconds] #21 163.5 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/fastmap/fastmap_1.1.0.tar.gz' ... #21 163.6 OK [downloaded 43.2 Kb in 62 milliseconds] #21 177.2 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/jsonlite/jsonlite_1.8.0.tar.gz' ... #21 177.5 OK [downloaded 1 Mb in 0.3 seconds] #21 191.6 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/dbplyr/dbplyr_2.1.1.tar.gz' ... #21 191.9 OK [downloaded 568.2 Kb in 0.24 seconds] #21 192.0 Retrieving 'https://cloud.r-project.org/src/contrib/assertthat_0.2.1.tar.gz' ... #21 192.0 OK [downloaded 12.4 Kb in 58 milliseconds] #21 206.2 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/blob/blob_1.2.2.tar.gz' ... #21 206.4 OK [downloaded 10 Kb in 0.22 seconds] #21 220.8 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/vctrs/vctrs_0.4.1.tar.gz' ... #21 221.1 OK [downloaded 895.3 Kb in 0.25 seconds] #21 235.8 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/cli/cli_3.3.0.tar.gz' ... #21 236.0 OK [downloaded 484.2 Kb in 0.19 seconds] #21 250.2 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/DBI/DBI_1.1.2.tar.gz' ... #21 250.4 OK [downloaded 690 Kb in 0.2 seconds] #21 264.6 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/dplyr/dplyr_1.0.9.tar.gz' ... #21 264.9 OK [downloaded 935.2 Kb in 0.23 seconds] #21 279.9 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/generics/generics_0.1.2.tar.gz' ... #21 280.1 OK [downloaded 120.4 Kb in 0.16 seconds] #21 294.3 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/lifecycle/lifecycle_1.0.1.tar.gz' ... #21 294.5 OK [downloaded 97.4 Kb in 0.21 seconds] #21 309.4 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/tibble/tibble_3.1.7.tar.gz' ... #21 309.6 OK [downloaded 659.1 Kb in 0.22 seconds] #21 309.8 Retrieving 'https://cloud.r-project.org/src/contrib/ellipsis_0.3.2.tar.gz' ... #21 309.9 OK [downloaded 7.9 Kb in 83 milliseconds] #21 325.9 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/pillar/pillar_1.7.0.tar.gz' ... #21 326.1 OK [downloaded 517.3 Kb in 0.24 seconds] #21 341.6 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/crayon/crayon_1.5.1.tar.gz' ... #21 341.8 OK [downloaded 39.2 Kb in 0.18 seconds] #21 357.9 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/utf8/utf8_1.2.2.tar.gz' ... #21 358.0 OK [downloaded 234.7 Kb in 0.12 seconds] #21 372.5 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/tidyselect/tidyselect_1.1.2.tar.gz' ... #21 372.8 OK [downloaded 89.9 Kb in 0.22 seconds] #21 387.6 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/purrr/purrr_0.3.4.tar.gz' ... #21 388.1 OK [downloaded 366.3 Kb in 0.43 seconds] #21 401.7 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/png/png_0.1-7.tar.gz' ... #21 401.7 OK [downloaded 24.4 Kb in 79 milliseconds] #21 415.7 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/R.oo/R.oo_1.24.0.tar.gz' ... #21 415.9 OK [downloaded 374.5 Kb in 0.2 seconds] #21 429.7 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/BiocManager/BiocManager_1.30.16.tar.gz' ... #21 429.8 OK [downloaded 256.3 Kb in 0.18 seconds] #21 443.8 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/httr/httr_1.4.3.tar.gz' ... #21 444.0 OK [downloaded 157.3 Kb in 0.18 seconds] #21 458.2 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/curl/curl_4.3.2.tar.gz' ... #21 458.5 OK [downloaded 774.8 Kb in 0.3 seconds] #21 473.0 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/openssl/openssl_2.0.0.tar.gz' ... #21 473.2 OK [downloaded 1.1 Mb in 0.18 seconds] #21 488.2 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/sys/sys_3.4.tar.gz' ... #21 488.4 OK [downloaded 19.7 Kb in 0.21 seconds] #21 489.0 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/limma/limma_3.50.1.tar.gz' ... #21 490.2 OK [downloaded 1.5 Mb in 1.2 seconds] #21 490.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/formatR/formatR_1.11.tar.gz' ... #21 490.9 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 501.9 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/formatR/formatR_1.11.tar.gz' ... #21 502.0 OK [downloaded 92.9 Kb in 0.16 seconds] #21 502.1 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/nlme/nlme_3.1-157.tar.gz' ... #21 502.6 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 513.5 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/nlme/nlme_3.1-157.tar.gz' ... #21 513.7 OK [downloaded 826.4 Kb in 0.17 seconds] #21 513.8 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/stringr/stringr_1.4.0.tar.gz' ... #21 514.2 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 524.8 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/stringr/stringr_1.4.0.tar.gz' ... #21 525.0 OK [downloaded 132.6 Kb in 0.18 seconds] #21 525.1 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/stringi/stringi_1.7.6.tar.gz' ... #21 525.6 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 536.4 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/stringi/stringi_1.7.6.tar.gz' ... #21 536.8 OK [downloaded 7.2 Mb in 0.44 seconds] #21 537.4 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/renv/renv_0.15.4.tar.gz' ... #21 537.9 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 548.4 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/renv/renv_0.15.4.tar.gz' ... #21 548.6 OK [downloaded 947.2 Kb in 0.18 seconds] #21 548.7 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/restfulr/restfulr_0.0.13.tar.gz' ... #21 549.2 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 559.7 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/restfulr/restfulr_0.0.13.tar.gz' ... #21 559.9 OK [downloaded 14.4 Kb in 0.14 seconds] #21 560.0 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/XML/XML_3.99-0.9.tar.gz' ... #21 560.5 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 571.4 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/XML/XML_3.99-0.9.tar.gz' ... #21 571.6 OK [downloaded 947.8 Kb in 0.19 seconds] #21 571.7 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/RCurl/RCurl_1.98-1.6.tar.gz' ... #21 572.3 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 583.1 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/RCurl/RCurl_1.98-1.6.tar.gz' ... #21 583.3 OK [downloaded 713.9 Kb in 0.21 seconds] #21 583.5 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/yaml/yaml_2.3.5.tar.gz' ... #21 584.0 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 595.0 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/yaml/yaml_2.3.5.tar.gz' ... #21 595.2 OK [downloaded 92.3 Kb in 0.2 seconds] #21 595.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/MASS/MASS_7.3-57.tar.gz' ... #21 595.8 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 606.2 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/MASS/MASS_7.3-57.tar.gz' ... #21 606.4 OK [downloaded 488.9 Kb in 0.17 seconds] #21 606.5 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/hms/hms_1.1.1.tar.gz' ... #21 607.1 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 617.5 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/hms/hms_1.1.1.tar.gz' ... #21 617.7 OK [downloaded 42.1 Kb in 0.16 seconds] #21 617.7 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/rpart/rpart_4.1.16.tar.gz' ... #21 618.2 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 629.2 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/rpart/rpart_4.1.16.tar.gz' ... #21 629.8 OK [downloaded 839 Kb in 0.58 seconds] #21 629.9 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/latticeExtra/latticeExtra_0.6-29.tar.gz' ... #21 630.4 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 641.1 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/latticeExtra/latticeExtra_0.6-29.tar.gz' ... #21 641.3 OK [downloaded 1.2 Mb in 0.18 seconds] #21 641.4 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/jpeg/jpeg_0.1-9.tar.gz' ... #21 641.9 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 652.4 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/jpeg/jpeg_0.1-9.tar.gz' ... #21 652.6 OK [downloaded 18.2 Kb in 0.16 seconds] #21 652.7 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/RSQLite/RSQLite_2.2.11.tar.gz' ... #21 653.2 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 663.6 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/RSQLite/RSQLite_2.2.11.tar.gz' ... #21 663.8 OK [downloaded 3.5 Mb in 0.29 seconds] #21 664.2 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/bit/bit_4.0.4.tar.gz' ... #21 664.8 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 675.5 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/bit/bit_4.0.4.tar.gz' ... #21 675.7 OK [downloaded 273.2 Kb in 0.2 seconds] #21 675.7 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/cpp11/cpp11_0.4.2.tar.gz' ... #21 676.4 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 686.7 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/cpp11/cpp11_0.4.2.tar.gz' ... #21 686.9 OK [downloaded 310.3 Kb in 0.17 seconds] #21 687.0 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/matrixStats/matrixStats_0.61.0.tar.gz' ... #21 687.4 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 697.7 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/matrixStats/matrixStats_0.61.0.tar.gz' ... #21 698.1 OK [downloaded 196.4 Kb in 0.38 seconds] #21 698.1 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/BH/BH_1.78.0-0.tar.gz' ... #21 698.6 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 709.2 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/BH/BH_1.78.0-0.tar.gz' ... #21 709.7 OK [downloaded 12.7 Mb in 0.48 seconds] #21 711.2 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/mgcv/mgcv_1.8-40.tar.gz' ... #21 711.7 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 722.4 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/mgcv/mgcv_1.8-40.tar.gz' ... #21 722.6 OK [downloaded 1.1 Mb in 0.27 seconds] #21 722.7 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/locfit/locfit_1.5-9.5.tar.gz' ... #21 723.2 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 733.5 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/locfit/locfit_1.5-9.5.tar.gz' ... #21 733.7 OK [downloaded 196.3 Kb in 0.2 seconds] #21 733.7 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/digest/digest_0.6.29.tar.gz' ... #21 734.2 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 744.6 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/digest/digest_0.6.29.tar.gz' ... #21 745.0 OK [downloaded 159 Kb in 0.37 seconds] #21 745.0 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/tidyr/tidyr_1.2.0.tar.gz' ... #21 745.5 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 756.1 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/tidyr/tidyr_1.2.0.tar.gz' ... #21 756.4 OK [downloaded 727.1 Kb in 0.28 seconds] #21 756.5 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/R.utils/R.utils_2.11.0.tar.gz' ... #21 757.0 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 767.4 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/R.utils/R.utils_2.11.0.tar.gz' ... #21 767.7 OK [downloaded 354.4 Kb in 0.24 seconds] #21 767.7 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/DT/DT_0.21.tar.gz' ... #21 768.3 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 778.7 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/DT/DT_0.21.tar.gz' ... #21 779.0 OK [downloaded 1.4 Mb in 0.25 seconds] #21 779.2 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/htmltools/htmltools_0.5.2.tar.gz' ... #21 779.7 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 790.9 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/htmltools/htmltools_0.5.2.tar.gz' ... #21 791.1 OK [downloaded 121.6 Kb in 0.18 seconds] #21 791.2 Retrieving 'https://cloud.r-project.org/src/contrib/base64enc_0.1-3.tar.gz' ... #21 791.2 OK [downloaded 7.6 Kb in 38 milliseconds] #21 791.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/htmlwidgets/htmlwidgets_1.5.4.tar.gz' ... #21 791.8 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 802.7 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/htmlwidgets/htmlwidgets_1.5.4.tar.gz' ... #21 803.4 OK [downloaded 934.4 Kb in 0.74 seconds] #21 803.5 Retrieving 'https://cloud.r-project.org/src/contrib/crosstalk_1.2.0.tar.gz' ... #21 803.7 OK [downloaded 289.5 Kb in 0.17 seconds] #21 803.8 Retrieving 'https://cloud.r-project.org/src/contrib/jquerylib_0.1.4.tar.gz' ... #21 804.0 OK [downloaded 508 Kb in 0.2 seconds] #21 804.0 Retrieving 'https://cloud.r-project.org/src/contrib/promises_1.2.0.1.tar.gz' ... #21 804.1 OK [downloaded 3 Mb in 99 milliseconds] #21 804.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/later/later_1.3.0.tar.gz' ... #21 804.9 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 816.4 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/later/later_1.3.0.tar.gz' ... #21 816.6 OK [downloaded 62.3 Kb in 0.13 seconds] #21 816.6 Retrieving 'https://cloud.r-project.org/src/contrib/RCircos_1.2.2.tar.gz' ... #21 816.8 OK [downloaded 1.8 Mb in 0.24 seconds] #21 816.9 Retrieving 'https://cloud.r-project.org/src/contrib/backports_1.4.1.tar.gz' ... #21 817.0 OK [downloaded 25.6 Kb in 37 milliseconds] #21 817.0 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/bookdown/bookdown_0.25.tar.gz' ... #21 817.6 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 828.2 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/bookdown/bookdown_0.25.tar.gz' ... #21 828.5 OK [downloaded 829.7 Kb in 0.26 seconds] #21 828.6 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/knitr/knitr_1.38.tar.gz' ... #21 829.3 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 839.9 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/knitr/knitr_1.38.tar.gz' ... #21 840.2 OK [downloaded 877.3 Kb in 0.33 seconds] #21 840.4 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/evaluate/evaluate_0.15.tar.gz' ... #21 840.9 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 851.9 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/evaluate/evaluate_0.15.tar.gz' ... #21 852.1 OK [downloaded 25 Kb in 0.23 seconds] #21 852.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/highr/highr_0.9.tar.gz' ... #21 852.9 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 864.1 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/highr/highr_0.9.tar.gz' ... #21 864.2 OK [downloaded 14.8 Kb in 97 milliseconds] #21 864.4 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/xfun/xfun_0.30.tar.gz' ... #21 864.9 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 876.5 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/xfun/xfun_0.30.tar.gz' ... #21 876.7 OK [downloaded 122.9 Kb in 0.17 seconds] #21 876.8 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/rmarkdown/rmarkdown_2.13.tar.gz' ... #21 877.3 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 888.3 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/rmarkdown/rmarkdown_2.13.tar.gz' ... #21 888.6 OK [downloaded 3.1 Mb in 0.25 seconds] #21 888.8 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/bslib/bslib_0.3.1.tar.gz' ... #21 889.3 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 900.6 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/bslib/bslib_0.3.1.tar.gz' ... #21 900.9 OK [downloaded 4.7 Mb in 0.25 seconds] #21 901.2 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/sass/sass_0.4.1.tar.gz' ... #21 901.7 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 913.5 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/sass/sass_0.4.1.tar.gz' ... #21 913.8 OK [downloaded 2.9 Mb in 0.24 seconds] #21 914.1 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/fs/fs_1.5.2.tar.gz' ... #21 914.7 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 926.7 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/fs/fs_1.5.2.tar.gz' ... #21 926.9 OK [downloaded 775 Kb in 0.15 seconds] #21 927.1 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/tinytex/tinytex_0.37.tar.gz' ... #21 927.7 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 939.5 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/tinytex/tinytex_0.37.tar.gz' ... #21 939.7 OK [downloaded 30.8 Kb in 0.16 seconds] #21 939.7 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/brew/brew_1.0-7.tar.gz' ... #21 940.2 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 951.0 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/brew/brew_1.0-7.tar.gz' ... #21 951.2 OK [downloaded 54.2 Kb in 0.16 seconds] #21 951.2 Retrieving 'https://cloud.r-project.org/src/contrib/brio_1.1.3.tar.gz' ... #21 951.3 OK [downloaded 12.3 Kb in 64 milliseconds] #21 951.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/broom/broom_0.7.12.tar.gz' ... #21 951.8 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 962.4 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/broom/broom_0.7.12.tar.gz' ... #21 962.6 OK [downloaded 619 Kb in 0.22 seconds] #21 962.8 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/ggplot2/ggplot2_3.3.6.tar.gz' ... #21 963.3 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 974.6 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/ggplot2/ggplot2_3.3.6.tar.gz' ... #21 974.8 OK [downloaded 2.9 Mb in 0.22 seconds] #21 975.1 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/gtable/gtable_0.3.0.tar.gz' ... #21 975.6 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 987.1 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/gtable/gtable_0.3.0.tar.gz' ... #21 987.2 OK [downloaded 359.5 Kb in 0.17 seconds] #21 987.4 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/isoband/isoband_0.2.5.tar.gz' ... #21 987.9 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 999.2 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/isoband/isoband_0.2.5.tar.gz' ... #21 999.5 OK [downloaded 1.6 Mb in 0.33 seconds] #21 999.7 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/scales/scales_1.2.0.tar.gz' ... #21 1000.2 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1011.8 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/scales/scales_1.2.0.tar.gz' ... #21 1012.0 OK [downloaded 263.9 Kb in 0.2 seconds] #21 1012.2 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/farver/farver_2.1.0.tar.gz' ... #21 1012.8 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1024.5 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/farver/farver_2.1.0.tar.gz' ... #21 1024.7 OK [downloaded 1.2 Mb in 0.24 seconds] #21 1024.8 Retrieving 'https://cloud.r-project.org/src/contrib/labeling_0.4.2.tar.gz' ... #21 1024.9 OK [downloaded 9.9 Kb in 45 milliseconds] #21 1025.0 Retrieving 'https://cloud.r-project.org/src/contrib/munsell_0.5.0.tar.gz' ... #21 1025.1 OK [downloaded 178.4 Kb in 62 milliseconds] #21 1025.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/colorspace/colorspace_2.0-3.tar.gz' ... #21 1026.0 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1038.0 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/colorspace/colorspace_2.0-3.tar.gz' ... #21 1038.1 OK [downloaded 2.1 Mb in 0.13 seconds] #21 1038.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/viridisLite/viridisLite_0.4.0.tar.gz' ... #21 1038.9 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1050.9 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/viridisLite/viridisLite_0.4.0.tar.gz' ... #21 1051.1 OK [downloaded 1.2 Mb in 0.22 seconds] #21 1051.2 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/callr/callr_3.7.0.tar.gz' ... #21 1051.7 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1062.1 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/callr/callr_3.7.0.tar.gz' ... #21 1062.2 OK [downloaded 72.8 Kb in 0.14 seconds] #21 1062.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/processx/processx_3.5.3.tar.gz' ... #21 1062.8 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1073.9 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/processx/processx_3.5.3.tar.gz' ... #21 1074.1 OK [downloaded 138.7 Kb in 0.14 seconds] #21 1074.2 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/ps/ps_1.6.0.tar.gz' ... #21 1074.8 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1086.3 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/ps/ps_1.6.0.tar.gz' ... #21 1086.5 OK [downloaded 116.9 Kb in 0.21 seconds] #21 1086.5 Retrieving 'https://cloud.r-project.org/src/contrib/cellranger_1.1.0.tar.gz' ... #21 1086.6 OK [downloaded 62.4 Kb in 79 milliseconds] #21 1086.7 Retrieving 'https://cloud.r-project.org/src/contrib/rematch_1.0.1.tar.gz' ... #21 1086.9 OK [downloaded 3.6 Kb in 0.2 seconds] #21 1086.9 Retrieving 'https://cloud.r-project.org/src/contrib/clipr_0.8.0.tar.gz' ... #21 1087.0 OK [downloaded 21.4 Kb in 66 milliseconds] #21 1087.0 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/commonmark/commonmark_1.8.0.tar.gz' ... #21 1087.6 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1098.0 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/commonmark/commonmark_1.8.0.tar.gz' ... #21 1098.1 OK [downloaded 136.2 Kb in 0.17 seconds] #21 1098.2 Retrieving 'https://cloud.r-project.org/src/contrib/credentials_1.3.2.tar.gz' ... #21 1098.2 OK [downloaded 224.7 Kb in 68 milliseconds] #21 1098.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/data.table/data.table_1.14.2.tar.gz' ... #21 1098.8 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1109.3 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/data.table/data.table_1.14.2.tar.gz' ... #21 1109.5 OK [downloaded 5.1 Mb in 0.27 seconds] #21 1109.9 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/desc/desc_1.4.1.tar.gz' ... #21 1110.4 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1121.1 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/desc/desc_1.4.1.tar.gz' ... #21 1121.3 OK [downloaded 78.8 Kb in 0.25 seconds] #21 1121.4 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/rprojroot/rprojroot_2.0.2.tar.gz' ... #21 1121.9 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1132.7 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/rprojroot/rprojroot_2.0.2.tar.gz' ... #21 1132.9 OK [downloaded 58.6 Kb in 0.16 seconds] #21 1132.9 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/devtools/devtools_2.4.3.tar.gz' ... #21 1133.5 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1144.0 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/devtools/devtools_2.4.3.tar.gz' ... #21 1144.2 OK [downloaded 363.7 Kb in 0.24 seconds] #21 1144.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/pkgbuild/pkgbuild_1.3.1.tar.gz' ... #21 1144.8 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1155.8 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/pkgbuild/pkgbuild_1.3.1.tar.gz' ... #21 1155.9 OK [downloaded 31.2 Kb in 78 milliseconds] #21 1156.0 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/pkgload/pkgload_1.2.4.tar.gz' ... #21 1156.6 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1167.7 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/pkgload/pkgload_1.2.4.tar.gz' ... #21 1168.0 OK [downloaded 61.4 Kb in 0.32 seconds] #21 1168.1 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/rstudioapi/rstudioapi_0.13.tar.gz' ... #21 1168.7 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1180.0 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/rstudioapi/rstudioapi_0.13.tar.gz' ... #21 1180.2 OK [downloaded 107.9 Kb in 0.16 seconds] #21 1180.2 Retrieving 'https://cloud.r-project.org/src/contrib/rcmdcheck_1.4.0.tar.gz' ... #21 1180.4 OK [downloaded 71.8 Kb in 0.13 seconds] #21 1180.4 Retrieving 'https://cloud.r-project.org/src/contrib/sessioninfo_1.2.2.tar.gz' ... #21 1180.5 OK [downloaded 166.9 Kb in 97 milliseconds] #21 1180.6 Retrieving 'https://cloud.r-project.org/src/contrib/xopen_1.0.0.tar.gz' ... #21 1180.7 OK [downloaded 11 Kb in 62 milliseconds] #21 1180.8 Retrieving 'https://cloud.r-project.org/src/contrib/remotes_2.4.2.tar.gz' ... #21 1180.8 OK [downloaded 149 Kb in 67 milliseconds] #21 1180.9 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/roxygen2/roxygen2_7.1.2.tar.gz' ... #21 1181.5 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1192.6 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/roxygen2/roxygen2_7.1.2.tar.gz' ... #21 1192.8 OK [downloaded 261.1 Kb in 0.2 seconds] #21 1192.9 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/rversions/rversions_2.1.1.tar.gz' ... #21 1193.4 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1204.7 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/rversions/rversions_2.1.1.tar.gz' ... #21 1204.8 OK [downloaded 41.1 Kb in 0.14 seconds] #21 1204.9 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/testthat/testthat_3.1.2.tar.gz' ... #21 1205.4 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1216.2 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/testthat/testthat_3.1.2.tar.gz' ... #21 1216.3 OK [downloaded 682.3 Kb in 0.15 seconds] #21 1216.5 Retrieving 'https://cloud.r-project.org/src/contrib/praise_1.0.0.tar.gz' ... #21 1216.5 OK [downloaded 6 Kb in 62 milliseconds] #21 1216.7 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/waldo/waldo_0.4.0.tar.gz' ... #21 1217.2 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1228.6 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/waldo/waldo_0.4.0.tar.gz' ... #21 1228.8 OK [downloaded 36.7 Kb in 0.2 seconds] #21 1228.9 Retrieving 'https://cloud.r-project.org/src/contrib/diffobj_0.3.5.tar.gz' ... #21 1229.0 OK [downloaded 468 Kb in 0.13 seconds] #21 1229.2 Retrieving 'https://cloud.r-project.org/src/contrib/rematch2_2.1.2.tar.gz' ... #21 1229.2 OK [downloaded 13.1 Kb in 66 milliseconds] #21 1229.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/usethis/usethis_2.1.5.tar.gz' ... #21 1229.8 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1240.6 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/usethis/usethis_2.1.5.tar.gz' ... #21 1240.8 OK [downloaded 327.1 Kb in 0.21 seconds] #21 1240.9 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/gert/gert_1.5.0.tar.gz' ... #21 1241.5 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1252.7 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/gert/gert_1.5.0.tar.gz' ... #21 1253.1 OK [downloaded 65.4 Kb in 0.31 seconds] #21 1253.2 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/zip/zip_2.2.0.tar.gz' ... #21 1253.8 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1265.2 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/zip/zip_2.2.0.tar.gz' ... #21 1265.4 OK [downloaded 111.7 Kb in 0.23 seconds] #21 1265.5 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/gh/gh_1.3.0.tar.gz' ... #21 1266.2 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1277.0 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/gh/gh_1.3.0.tar.gz' ... #21 1277.3 OK [downloaded 44.5 Kb in 0.35 seconds] #21 1277.5 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/gitcreds/gitcreds_0.1.1.tar.gz' ... #21 1278.1 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1289.5 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/gitcreds/gitcreds_0.1.1.tar.gz' ... #21 1289.8 OK [downloaded 60.5 Kb in 0.28 seconds] #21 1289.9 Retrieving 'https://cloud.r-project.org/src/contrib/ini_0.3.1.tar.gz' ... #21 1290.0 OK [downloaded 3.4 Kb in 65 milliseconds] #21 1290.1 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/whisker/whisker_0.4.tar.gz' ... #21 1290.6 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1301.9 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/whisker/whisker_0.4.tar.gz' ... #21 1302.1 OK [downloaded 27.9 Kb in 0.19 seconds] #21 1302.1 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/dtplyr/dtplyr_1.2.1.tar.gz' ... #21 1302.6 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1312.9 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/dtplyr/dtplyr_1.2.1.tar.gz' ... #21 1313.2 OK [downloaded 281.6 Kb in 0.23 seconds] #21 1313.2 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/fontawesome/fontawesome_0.2.2.tar.gz' ... #21 1313.8 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1324.4 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/fontawesome/fontawesome_0.2.2.tar.gz' ... #21 1324.6 OK [downloaded 1.1 Mb in 0.25 seconds] #21 1324.7 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/forcats/forcats_0.5.1.tar.gz' ... #21 1325.2 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1336.0 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/forcats/forcats_0.5.1.tar.gz' ... #21 1336.1 OK [downloaded 252.2 Kb in 0.18 seconds] #21 1336.2 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/gargle/gargle_1.2.0.tar.gz' ... #21 1336.7 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1347.2 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/gargle/gargle_1.2.0.tar.gz' ... #21 1347.4 OK [downloaded 306.1 Kb in 0.19 seconds] #21 1347.5 Retrieving 'https://cloud.r-project.org/src/contrib/getopt_1.20.3.tar.gz' ... #21 1347.6 OK [downloaded 18.1 Kb in 0.18 seconds] #21 1347.7 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/ggforce/ggforce_0.3.3.tar.gz' ... #21 1348.3 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1358.8 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/ggforce/ggforce_0.3.3.tar.gz' ... #21 1359.2 OK [downloaded 838 Kb in 0.43 seconds] #21 1359.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/tweenr/tweenr_1.0.2.tar.gz' ... #21 1359.8 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1370.7 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/tweenr/tweenr_1.0.2.tar.gz' ... #21 1370.9 OK [downloaded 555.3 Kb in 0.28 seconds] #21 1371.0 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/polyclip/polyclip_1.10-0.tar.gz' ... #21 1371.5 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1382.1 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/polyclip/polyclip_1.10-0.tar.gz' ... #21 1382.3 OK [downloaded 77.8 Kb in 0.21 seconds] #21 1382.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/googledrive/googledrive_2.0.0.tar.gz' ... #21 1382.9 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1393.4 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/googledrive/googledrive_2.0.0.tar.gz' ... #21 1393.7 OK [downloaded 1.5 Mb in 0.29 seconds] #21 1393.8 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/uuid/uuid_1.0-4.tar.gz' ... #21 1394.4 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1405.0 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/uuid/uuid_1.0-4.tar.gz' ... #21 1405.1 OK [downloaded 70.5 Kb in 0.16 seconds] #21 1405.2 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/googlesheets4/googlesheets4_1.0.0.tar.gz' ... #21 1405.7 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1416.1 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/googlesheets4/googlesheets4_1.0.0.tar.gz' ... #21 1416.3 OK [downloaded 216.8 Kb in 0.21 seconds] #21 1416.4 Retrieving 'https://cloud.r-project.org/src/contrib/ids_1.0.1.tar.gz' ... #21 1416.6 OK [downloaded 89.1 Kb in 0.15 seconds] #21 1416.6 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/h2o/h2o_3.36.0.3.tar.gz' ... #21 1417.2 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1427.7 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/h2o/h2o_3.36.0.3.tar.gz' ... #21 1427.9 OK [downloaded 593.2 Kb in 0.22 seconds] #21 1428.0 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/haven/haven_2.4.3.tar.gz' ... #21 1428.6 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1439.1 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/haven/haven_2.4.3.tar.gz' ... #21 1439.4 OK [downloaded 289.8 Kb in 0.27 seconds] #21 1439.5 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/readr/readr_2.1.2.tar.gz' ... #21 1440.1 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1451.0 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/readr/readr_2.1.2.tar.gz' ... #21 1451.2 OK [downloaded 295.2 Kb in 0.23 seconds] #21 1451.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/vroom/vroom_1.5.7.tar.gz' ... #21 1451.9 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1463.4 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/vroom/vroom_1.5.7.tar.gz' ... #21 1463.6 OK [downloaded 710.9 Kb in 0.23 seconds] #21 1463.8 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/tzdb/tzdb_0.2.0.tar.gz' ... #21 1464.3 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1476.1 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/tzdb/tzdb_0.2.0.tar.gz' ... #21 1476.3 OK [downloaded 550.3 Kb in 0.2 seconds] #21 1476.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/httpuv/httpuv_1.6.5.tar.gz' ... #21 1477.1 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1487.9 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/httpuv/httpuv_1.6.5.tar.gz' ... #21 1488.1 OK [downloaded 1.7 Mb in 0.18 seconds] #21 1488.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/lares/lares_5.1.1.tar.gz' ... #21 1488.8 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1499.6 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/lares/lares_5.1.1.tar.gz' ... #21 1499.7 OK [downloaded 445.1 Kb in 0.15 seconds] #21 1499.8 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/lubridate/lubridate_1.8.0.tar.gz' ... #21 1500.3 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1511.3 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/lubridate/lubridate_1.8.0.tar.gz' ... #21 1511.5 OK [downloaded 464.6 Kb in 0.26 seconds] #21 1511.6 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/openxlsx/openxlsx_4.2.5.tar.gz' ... #21 1512.3 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1523.1 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/openxlsx/openxlsx_4.2.5.tar.gz' ... #21 1523.4 OK [downloaded 1.3 Mb in 0.26 seconds] #21 1523.5 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/patchwork/patchwork_1.1.1.tar.gz' ... #21 1524.0 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1534.8 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/patchwork/patchwork_1.1.1.tar.gz' ... #21 1535.1 OK [downloaded 3 Mb in 0.34 seconds] #21 1535.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/pROC/pROC_1.18.0.tar.gz' ... #21 1535.8 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1546.7 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/pROC/pROC_1.18.0.tar.gz' ... #21 1546.9 OK [downloaded 672.3 Kb in 0.15 seconds] #21 1547.0 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/plyr/plyr_1.8.7.tar.gz' ... #21 1547.6 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1558.5 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/plyr/plyr_1.8.7.tar.gz' ... #21 1558.7 OK [downloaded 392.1 Kb in 0.15 seconds] #21 1558.8 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/rpart.plot/rpart.plot_3.1.0.tar.gz' ... #21 1559.4 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1570.0 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/rpart.plot/rpart.plot_3.1.0.tar.gz' ... #21 1570.3 OK [downloaded 656.3 Kb in 0.26 seconds] #21 1570.4 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/rvest/rvest_1.0.2.tar.gz' ... #21 1570.9 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1581.9 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/rvest/rvest_1.0.2.tar.gz' ... #21 1582.1 OK [downloaded 92.1 Kb in 0.22 seconds] #21 1582.2 Retrieving 'https://cloud.r-project.org/src/contrib/selectr_0.4-2.tar.gz' ... #21 1582.3 OK [downloaded 40.4 Kb in 76 milliseconds] #21 1582.3 Retrieving 'https://cloud.r-project.org/src/contrib/manhattanly_0.3.0.tar.gz' ... #21 1582.6 OK [downloaded 370.4 Kb in 0.26 seconds] #21 1582.6 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/plotly/plotly_4.10.0.tar.gz' ... #21 1583.2 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1593.8 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/plotly/plotly_4.10.0.tar.gz' ... #21 1594.0 OK [downloaded 3.7 Mb in 0.22 seconds] #21 1594.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/modelr/modelr_0.1.8.tar.gz' ... #21 1594.8 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1605.3 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/modelr/modelr_0.1.8.tar.gz' ... #21 1605.5 OK [downloaded 118.5 Kb in 0.17 seconds] #21 1605.5 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/optparse/optparse_1.7.1.tar.gz' ... #21 1606.0 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1617.5 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/optparse/optparse_1.7.1.tar.gz' ... #21 1617.6 OK [downloaded 40.4 Kb in 0.14 seconds] #21 1617.7 Retrieving 'https://cloud.r-project.org/src/contrib/pander_0.6.5.tar.gz' ... #21 1617.9 OK [downloaded 384.5 Kb in 0.21 seconds] #21 1617.9 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/pdftools/pdftools_3.1.1.tar.gz' ... #21 1618.5 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1628.8 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/pdftools/pdftools_3.1.1.tar.gz' ... #21 1629.0 OK [downloaded 913.9 Kb in 0.17 seconds] #21 1629.1 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/qpdf/qpdf_1.1.tar.gz' ... #21 1629.6 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1640.6 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/qpdf/qpdf_1.1.tar.gz' ... #21 1640.7 OK [downloaded 313.9 Kb in 0.15 seconds] #21 1640.8 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/rapportools/rapportools_1.0.tar.gz' ... #21 1641.3 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1652.6 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/rapportools/rapportools_1.0.tar.gz' ... #21 1652.8 OK [downloaded 24.3 Kb in 0.27 seconds] #21 1652.9 Retrieving 'https://cloud.r-project.org/src/contrib/reshape_0.8.9.tar.gz' ... #21 1653.1 OK [downloaded 40.9 Kb in 0.14 seconds] #21 1653.1 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/readxl/readxl_1.3.1.tar.gz' ... #21 1653.6 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1664.0 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/readxl/readxl_1.3.1.tar.gz' ... #21 1664.2 OK [downloaded 2 Mb in 0.19 seconds] #21 1664.3 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/reprex/reprex_2.0.1.tar.gz' ... #21 1664.8 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1675.4 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/reprex/reprex_2.0.1.tar.gz' ... #21 1675.6 OK [downloaded 1 Mb in 0.21 seconds] #21 1675.7 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/rmdformats/rmdformats_1.0.3.tar.gz' ... #21 1676.2 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1686.6 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/rmdformats/rmdformats_1.0.3.tar.gz' ... #21 1687.4 OK [downloaded 1.9 Mb in 0.78 seconds] #21 1687.5 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/shiny/shiny_1.7.1.tar.gz' ... #21 1688.0 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1698.7 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/shiny/shiny_1.7.1.tar.gz' ... #21 1698.9 OK [downloaded 2.8 Mb in 0.19 seconds] #21 1699.2 Retrieving 'https://cloud.r-project.org/src/contrib/xtable_1.8-4.tar.gz' ... #21 1699.3 OK [downloaded 551.4 Kb in 90 milliseconds] #21 1699.4 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/sourcetools/sourcetools_0.1.7.tar.gz' ... #21 1700.0 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1710.8 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/sourcetools/sourcetools_0.1.7.tar.gz' ... #21 1710.9 OK [downloaded 23.6 Kb in 0.15 seconds] #21 1711.0 Retrieving 'https://bioconductor.org/packages/3.14/bioc/src/contrib/Archive/tidyverse/tidyverse_1.3.1.tar.gz' ... #21 1711.5 ERROR [curl: (22) The requested URL returned error: 404 Not Found] #21 1721.8 Retrieving 'https://cloud.r-project.org/src/contrib/Archive/tidyverse/tidyverse_1.3.1.tar.gz' ... ```
pdiakumis commented 1 year ago

We've changed the Docker build to use exclusively conda which is generally up to date (and will also have Bioconductor issues of its own, don't worry).