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umccr / RNAsum

Pipeline for generating RNAseq-based cancer patient reports
https://umccr.github.io/RNAsum/
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Handle sash SV file #126

Closed pdiakumis closed 1 month ago

pdiakumis commented 10 months ago

See https://umccr.slack.com/archives/C025TLC7D/p1704937844950239. Probably good to also have a chat with the curation team about which expression values they're more interested in.

pdiakumis commented 1 month ago

We need to prioritise this for v1.2.0 @skanwal so that we can move onto oncoanalyser, probably good to have something in place by the end of this month.

pdiakumis commented 1 month ago

We can focus on grabbing just the gene names from the SV file - see https://umccr.slack.com/archives/C016A5BSKRC/p1726720912422739?thread_ts=1724722921.773309&cid=C016A5BSKRC