umccr / RNAsum

Pipeline for generating RNAseq-based cancer patient reports
https://umccr.github.io/RNAsum/
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no 'dimnames' attribute for array #131

Closed skanwal closed 8 months ago

skanwal commented 10 months ago

One of the test runs in dev using ghcr.io/umccr/rnasum:0.5.0.9001 has errored out with:

$ gds-view --gds-path gds://development/sehrish/rnasum_0.5.0/SBJ04578/work/logs/main/try-1/task-stdouterr-0.log --to-stdout

Quitting from lines 2849-2931 [cdf_plots_sv] (rnasum.Rmd)
Error in `data.q[, colnames(data)[targets$Target %in% group]]`:
! no 'dimnames' attribute for array
Backtrace:
 1. RNAsum::cdfPlot(...)
 2. RNAsum::exprGroupsStats_geneWise(gene.data, targets)
 3. base::cbind(...)
Execution halted

ICA workflow detail:

wfr.80acaa874c5e40bda115f28609706be7 - trn.2b6258ffe70d454d8d802e5727034c01

pdiakumis commented 10 months ago

Related to #122.