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umccr / RNAsum

Pipeline for generating RNAseq-based cancer patient reports
https://umccr.github.io/RNAsum/
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Add support for transcript level counts in R-package code #137

Open skanwal opened 8 months ago

skanwal commented 8 months ago

Currently we allow gene level counts https://github.com/umccr/RNAsum/blob/rnasum-rpackage/R/sample_data.R#L49. It'll be useful to add support for transcript level counts since we already are using annotationhub for ensembl db query.