Adding a script for launching RNAsum in dev based on production workflow inputs. Steps are:
Grab metadata from prod portaldb for rnasum workflows that have succeeded - this will give us paths to input gds dirs (umccrise, dragen, arriba)
Fish out the specific files required for RNAsum from those input dirs, and
generate their presigned URLs
Use the wfl.87e07ae6b46645a181e04813de535216 dev workflow parent to launch version 0.5.0--304c3ac of the rnasum workflow - this will take in a json object with the required inputs and engineParameters that override the docker container specified.
This essentially allows you to launch RNAsum on a set of SubjectIDs (that have the required inputs) without too much fuss - I'm testing v0.6.5 on the listed 10 samples in dev.
Adding a script for launching RNAsum in dev based on production workflow inputs. Steps are:
wfl.87e07ae6b46645a181e04813de535216dev workflow parent to launch version0.5.0--304c3acof the rnasum workflow - this will take in a json object with the required inputs and engineParameters that override the docker container specified.This essentially allows you to launch RNAsum on a set of SubjectIDs (that have the required inputs) without too much fuss - I'm testing v0.6.5 on the listed 10 samples in dev.