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umccr / RNAsum

Pipeline for generating RNAseq-based cancer patient reports
https://umccr.github.io/RNAsum/
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Consider introducing negation flags #163

Open skanwal opened 3 months ago

skanwal commented 3 months ago

https://umccr.slack.com/archives/C04F5SMUH8C/p1724193664749609?thread_ts=1724151824.557779&cid=C04F5SMUH8C

If we want to have the filter, batch_rm, log and pcgr_splice_vars on by default, we could instead have negating flags e.g. like
--nofilter, --batch_keep, --nolog