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umccr / RNAsum

Pipeline for generating RNAseq-based cancer patient reports
https://umccr.github.io/RNAsum/
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Handle when no SV genes are expressed #172

Closed pdiakumis closed 1 month ago

pdiakumis commented 1 month ago

https://umccr.slack.com/archives/C8CG6K76W/p1727536832986939

2024-09-28T15:15:16.034818463Z stdout F 112/215 [sv_genes_table_perc]
2024-09-28T15:15:16.062213596Z stderr F
2024-09-28T15:15:16.062228015Z stderr F Quitting from lines 2720-2773 [sv_genes_table_perc] (rnasum.Rmd)
2024-09-28T15:15:16.072514142Z stderr F Error:
2024-09-28T15:15:16.072540989Z stderr F ! !is.null(genes) is not TRUE
2024-09-28T15:15:16.072545235Z stderr F Backtrace:
2024-09-28T15:15:16.072548177Z stderr F  1. RNAsum::exprTable(...)
2024-09-28T15:15:16.072551109Z stderr F  2. assertthat::assert_that(...)
2024-09-28T15:15:16.074446449Z stderr F Execution halted