Do not run SV chunks when 0 expressed SV genes

umccr / RNAsum

Pipeline for generating RNAseq-based cancer patient reports

https://umccr.github.io/RNAsum/

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Do not run SV chunks when 0 expressed SV genes #173

Closed pdiakumis closed 1 month ago

pdiakumis commented 1 month ago

Currently the SV chunks don't run only when the SV file is empty. When the genes in there are not expressed, it causes issues with the exprTable which tries to take in a NULL genes object. Handling that here.

Fixes #172. Tested locally on the sample hitting the bug.