Quitting from lines 1518-1547 [goi_summary_update] (rnasum.Rmd)
Error in `dplyr::filter()`:
ℹ In argument: `.data$reported_fusion | .data$geneA_dna_support | .data$geneB_dna_support`.
ℹ In row 1.
Caused by error in `.data$geneA_dna_support`:
! Column `geneA_dna_support` not found in `.data`
This is due to the geneA_dna_support/geneB_dna_support columns only created in the fusions_and_sv_data_prep chunk which evaluates upon runSVsChunk being TRUE (which is not the case when the sv_tsv param is NULL).
From user report:
This is due to the
geneA_dna_support/geneB_dna_supportcolumns only created in thefusions_and_sv_data_prepchunk which evaluates uponrunSVsChunkbeing TRUE (which is not the case when the sv_tsv param is NULL).