Rmd refactor4 - Githubissues

umccr / RNAsum

Pipeline for generating RNAseq-based cancer patient reports

https://umccr.github.io/RNAsum/

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Rmd refactor4 #85

Closed skanwal closed 1 year ago

skanwal commented 1 year ago

This includes a lot of changes that were discussed in last few weeks. Quick summary is:

updating input test data to match with outputs from production workflows.
refactored reading in WGS and WTS outputs
removed unused/unsupported code blocks
use separate lists for reading sample and reference data via functions
move to using tbl for reading data sources
general code refactoring