I've completed the Arriba plot section, neeearly there. Probably best to look at individual commits else it's a bit too much to review Sehrish!
exprTable: refactor DT table rendering, create function for break/colour setup. I decreased the quantile step by a factor of 10 (from 1801 -> 181) and the report now renders in Chrome. I will push a proper fix in the coming days, and also PR to master.
fusions: refactored DT tables, refactored Arriba/Dragen fusion sections. Will need to handle those a bit better with less code duplication going forward, will see how the tests pan out.
Circos: handling the RCircos code in a function, avoiding duplication.
I've completed the Arriba plot section, neeearly there. Probably best to look at individual commits else it's a bit too much to review Sehrish!