Add cram input option to samtools fastq pipeline

umccr / cwl-ica

A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide

MIT License

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Closed alexiswl closed 1 month ago

alexiswl commented 1 month ago

Also, we're on 1.12 so I think we can bump to 1.20 for a new pipeline.

alexiswl commented 1 month ago

Supported cram files in dragen somatic and germline steps instead