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umccr / cwl-ica

A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide
MIT License
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Allow cram inputs into dragen somatic with germline pipeline #539

Closed alexiswl closed 1 month ago

alexiswl commented 1 month ago

Allow data inputs to be cram inputs in the dragen somatic with germline pipeline.

This will allow cohort data that is in cram format to be run through the dragen-somatic-with-germline pipeline