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umccr / cwl-ica

A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide
MIT License
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Add cram input functionality to dragen-somatic-with-germline pipeline #542

Closed alexiswl closed 3 months ago

alexiswl commented 3 months ago

Allows for a cram_reference and cram_input and tumor_cram_input parameters.

Note we only allow for one cram_reference so this does assume that if both cram_input and tumor_cram_input are used, both are derived from the same cram_reference.

TODO