Extract and capture LibraryRun yield and QC pass

[victorskl]

Context:

• Pipeline has LibraryRun data model that track the sequenced-library i.e. as they are appeared in SampleSheet.csv of the Run directory.
• Hence, this LibraryRun won't track a library such as those that has failed at library kit prep stage at Lab side.
• Collection of LibraryRun for the said SequenceRun is guaranteed avail in Portal when BSSH SequenceRun reach to PendingAnalysis status. Then we start BCL Conversion.
• After BCL Conversion (and WGS Alignment QC), we wish to update a couple of fields on this LibraryRun data model. Current fields of interest are as follows.

https://github.com/umccr/data-portal-apis/blob/a17678f9b1413d0ad4b2cfb5712251c9da8b1637/data_portal/models/libraryrun.py#L30-L40

Use Case:

• This information can augment on automated Tumor/Normal Paring decision logic
• Example reproducible case: SBJ01954 - see https://umccr.slack.com/archives/C8CG6K76W/p1650332699060189

Actions:

• Implement it

[victorskl]

More related sample that need QC go/no-go

https://github.com/umccr/RNAsum/issues/109

[victorskl]

QC feedback loop

https://umccr.slack.com/archives/CCC5J2NM6/p1718591802341509