Adding support for Sash QC/biomarker outputs (cancer report tables, PCGR JSON).
Adding Sash summary reporter.
Also locking down regexes for complete matches to S3/GDS subpaths given SubjectID + LibraryID_tumor, instead of relying on file suffixes. Removes a bit of flexibility but need to finally start targeting a more production-like environment. Might reconsider once this lives in the Orcabus ecosystem.
SubjectID+LibraryID_tumor, instead of relying on file suffixes. Removes a bit of flexibility but need to finally start targeting a more production-like environment. Might reconsider once this lives in the Orcabus ecosystem.