umccr / dracarys

:dragon_face: DRAGEN workflow tidying :fire:
https://umccr.github.io/dracarys/
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Conpair: convert SampleID to phenotype #146

Open pdiakumis opened 1 month ago

pdiakumis commented 1 month ago

We can use the input tumor/normal SampleIDs to turn this into a single row:

  sampleid  contamination concordance markers_used markers_total marker_threshold mapq_min baseq_min
  <chr>             <dbl>       <dbl>        <dbl>         <dbl>            <dbl>    <dbl>     <dbl>
1 PRJ211062         0.034        NA             NA            NA               NA       NA        NA
2 PRJ211091         0.197        99.8         3925          7353                0       10        20