Update noodles to 0.60 and other small dependency changes.
Fix clippy warnings.
noodles 0.60 has some changes that are useful for the crypt4gh branch and I didn't want this to get too out of sync. I'm leaving out changes related to http 1.0, e.g. hyper 1.0, tower 0.5, aws 1.0, etc, because these are recent and quite large, so some of our other dependencies haven't introduced them yet.
Changes
noodles 0.60 has some changes that are useful for the crypt4gh branch and I didn't want this to get too out of sync. I'm leaving out changes related to
http
1.0, e.g.hyper
1.0,tower
0.5,aws
1.0, etc, because these are recent and quite large, so some of our other dependencies haven't introduced them yet.